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Don, 

I have found the following library to be useful for this purpose

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See here specifically:

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HTH,


john




On Wed, 21 Jul 2021 at 11:23, Krieger, Donald N. <kriegerd@upmc.edu> wrote:

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Thanks, Bruce, and thanks for getting back so quickly.

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Fischl, Bruce
Sent: Wednesday, July 21, 2021 11:08 AM
To: 'freesurfer@nmr.mgh.harvard.edu' <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] shortest distance between two points along the gray/white boundary

 

Hi Don

 

By far the easiest way to do this is to find the locations of the points on the sphere then compute the length of the great circle arc connecting them, then correct by the ratio of the sqrt of the areas of the two surfaces.

 

Alternatively I think Rudolph may have had some tools for computing actual geodesics (the procedure about will give you like a 10% error)

 

Cheers

Bruce

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Krieger, Donald N.
Sent: Wednesday, July 21, 2021 10:53 AM
To: 'freesurfer@nmr.mgh.harvard.edu' <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] shortest distance between two points along the gray/white boundary

 

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Dear experts,

 

I would like to compute the shortest distance along the gray/white boundary between two points on the boundary, i.e. between points with “white” parcellation regions. The distance need not be guaranteed to be minimized and the path need not be unique. Can you suggest an approach using the freesurfer tools?

 

Thanks - Don

 

Department of Neurological Surgery

University of Pittsburgh

 

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--

Dr. John D. Griffiths

Independent Scientist @ Krembil Centre for Neuroinformatics, CAMH, Toronto

Assistant Professor @ Department of Psychiatry & Institute of Medical Sciences, University of Toronto

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~~~

Frontiers in Neuroinformatics 

& Frontiers in Computational Neuroscience

joint Research Topic:

“Neuroinformatics of Large-Scale Brain Modelling”

Eds. John Griffiths, Kelly Shen, Padraig Gleeson

Now accepting submissions! 

Abstract deadline 26 Feb 2021. Manuscript deadline 30 July 2021.  

See topic page here for more info 



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