I don't know what is wrong. Can you upload the hires run? Instructions below

From the linux command line,
Create the file you want to upload, eg,
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subject.tar.gz
Send an email that the file has been and the name of the file.

On 5/21/2020 9:35 AM, Jones, Richard wrote:

External Email - Use Caution

I ran freesurfer 7.1 with the following options:-

-i ./study/T1_SAG/IM-0001-0001.dcm -FLAIR ./study/SAG_3D_FLAIR/IM-0001-0001.dcm -s TEST_050620 -3T –mprage –FLAIRpial –hires –parallel –all

The job failed, the logfile recon-all_hires.log is attached. I then reran the job with the same datasets but exchanged –hires with –conf2hires and used the subject ID TEST_050620c and the job completed successfully (the logfile for this job, recon-all_conf2hires.log, is also attached). Any idea what the problem is when using the –hires option?

Thanks

Richard
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