Hello FreeSurfer Developers,

When I used the FS.dev version for hypothalamus segmentation, I have segmented it sucessfully.

Tensorflow-CPU has been installed to run this module (hypothalamus_seg).

The .sh file was:

for subj3 in 111 112 114...and 431
do
mri_segment_hypothalamic_subunits --i /run/media/guanliyuan/Elements_Learningmaterials/try3_fs/$subj3/mri/orig/001.mgz --o /run/media/guanliyuan/Elements_Learningmaterials/try3_fs/try3fs_seg/$subj3/ --vol /run/media/guanliyuan/Elements_Learningmaterials/try3_fs/try3fs_seg/$subj3/ --threads 1 --cpu
done

However, in the .csv file of some subjects, there were no the volume of the left and right anterior-inferior. I don't know the reason for this cese.

I am looking forward to your reply. Thanks very much in advance.

The results were:

Subjects left anterior-inferior left anterior-superior left posterior left tubular inferior left tubular superior right anterior-inferior right anterior-superior right posterior right tubular inferior right tubular superior whole left whole right

314	0	4.529	67.887	25.924	56.559	0	6.571	87.712	44.5	83.406	154.899	222.189
331	14.973	23.419	128.191	152.167	140.735	0	3.832	111.306	122.421	97.331	459.485	334.89

1) FreeSurfer version: freesurfer-linux-centos7_x86_64-dev
2) Platform: CentOS 7.9

Sincerely,

Zhang