Can you show it with the ?h.orig surfaces? Those should closely follow the boundary of the wm.mgz volume

On 9/23/2020 2:11 PM, Jake Jensen wrote:

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Hello, 

I am attempting to edit a subject, but upon removing voxels where the WM and pial surfaces should not be, the WM surface does not receed (pictures are attached). 

I have attempted this with -all and -autorecon2, running it again from the original 001.mgz file, as well as attempting to run it from the beginning with -clean. The end result is consistently the same, as seen in the attached images. Additionally, it is strange that the WM surface crosses the pial. 

I could not seem to find a solution to this in the archives. 

FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c

Platform: OSX mojave 

-all -autorecon2

Recon all log attached 

Thank you! 

-Jacob

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