Hope you are doing well! Thank you very much for your contribution to the freesurfer software which offers great help to research in the neuroimaging area. However, I met a problem when using it and I hope you can help me with it.
The freesurfer version I use is freesurfer-linux-centos7_x86_64-7.1.1.tar.gz. I hope to implement AnatomiCuts with my own data which is tractography data (.vtk) reconstructed from HCP dataset with ukf tractography method. When I tried to run the dmri_AnatomiCuts
command (the complete command is: dmri_AnatomiCuts -s wmparc.nii.gz -f 100307_ukf_pp.vtk -c 100 -n 14 -e 50 -o output -d s), the following messages appears:
ups
ups
ups
ups
ups
ups
...
queue emplace 3894
queue emplace 0
It seems that the algorithm is running. But it just stays here and I cannot get the final results even with input data of only 100 fibers divided into 2 clusters. I
am really confused what is going on here. Are there any special requirements for the input data?
Your help will be greatly appreciated.
Regards,
Yuqian