I am trying to run recon-all -all in the cluster but unfortunately I am unable to obtain the parcellated images (exact command is  recon-all -parallel -openmp $NSLOTS -s ${j} -i ${j}_corrected.nii.gz -all -cw256)

I have run the script different times with different subjects and it just stops abruptly always in the same point, after WM segmentation, see below the recon-all-status.log for one subject (same in all of them, it stops after WM segmentation)

I tried it on my laptop and in my desktop computer and it works, but not in the cluster...

Any chance you know why this may be happening? 

Best regards, 

Carlos

#@# MotionCor Tue Mar  7 22:10:08 GMT 2023
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