From: Kumar, Avnish <Avnish.Kumar@MGH.HARVARD.EDU>
Sent: Friday, September 23, 2022 11:47 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Nolan, Jackson <JNOLAN5@mgh.harvard.edu>; mdalaminbadal@gmail.com <mdalaminbadal@gmail.com>
Subject: Re: [Freesurfer] segment_subregions failed

Hi Markus,

This bug has been fixed in the dev branch of Freesurfer (FS). You can get the changes in your local copy of FS by either git checkout the python/gems/subregions/core.py file into the appropriate subfolder (<FS_install_dir>/python/gems/subregions) where you installed FS or you could simply edit the core.py file at that location as in the bug fix.

Best,

Avnish

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Markus Handal Sneve <m.h.sneve@psykologi.uio.no>
Sent: Wednesday, September 21, 2022 2:35 PM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Cc: Nolan, Jackson <JNOLAN5@mgh.harvard.edu>; mdalaminbadal@gmail.com <mdalaminbadal@gmail.com>
Subject: Re: [Freesurfer] segment_subregions failed

External Email - Use Caution

Hi,

Sorry if this ends up in the wrong place, had to reactivate my FS-mailing list account.

So I get the exact same error as reported by Mamun Al-Amin when running segment_subregion (FS v7.3.2).

Fresh terminal, no other FS version running in the background, build-stamp.txt shows the correct version.

Hopefully you can see the screenshot below, sadly cannot ctrl-c text out of our cluster

Thanks!

Markus Handal Sneve, Ph.D.
Center for Lifespan Changes in Brain and Cognition
Department of Psychology
University of Oslo