Just map your mni152-spm volume to the surface with mri_vol2surf and
--regheader, eg,
mri_vol2surf --mov yourspm152.nii.gz --hemi lh --projfrac 0.5 --s mni152
--o lh.yourspm152.nii.gz
then visualize
tksurferfv mni152 lh inflated -ov lh.yourmni152.nii.gz
On 3/22/17 3:46 PM, Schoot, Lotte wrote:
> Thanks so much, I appreciate the help.
> However, I am not sure what I am supposed to do with the output of the recon-all process.
> Can I simply use the .dat file that is outputted there in MRI_vol2surf?
>
> Lotte
>
>
> Date: Wed, 22 Mar 2017 13:01:42 -0400
> From: Douglas Greve <greve@nmr.mgh.harvard.edu>
> Subject: Re: [Freesurfer] display SPM results on inflated surface?
> To: freesurfer@nmr.mgh.harvard.edu
> Message-ID: <41134c50-bb0b-792c-c52b-b6850bcecf3c@nmr.mgh.harvard. >edu
> Content-Type: text/plain; charset="windows-1252"
>
> If you have the T1 for the mni152 (which is somewhere in the bowels of the spm distribution), then you just run recon-all on it. I've done this for myself, so you can just download the result (which I have not checked thoroughly) from here https://gate.nmr.mgh.harvard.edu/safelinks/greve/mni152. tar.gz
>
>
>
> On 3/21/17 1:27 PM, Schoot, Lotte wrote:
>> Hi Doug and others,
>>
>> A while ago, I got this reply to my question below (thanks!). I tried to look in to it, but I am a bit confused (probably because I am very new to Freesurfer).
>> My results are on the MNI 152, but I don't understand what you mean with 'run the mni152 through freesurfer'. Is this the process to get the register.dat file that is required in mri_vol2surf?
>> What would you recommend to get the register.dat file? Is it possible to use bbregister for that? I have tried this, but I don't know whether it is correct:
>>
>> bbregister --s fsaverage --mov con_0001.nii --init-spm --reg
>> register.dat --bold
>>
>>
>> Thanks!
>> Lotte
>>
>>
>>> If your results are on the MNI152, you can run the mni152 through
>>> freesurfer, then use mri_vol2surf to map the data to the surface then
>>> view it with freeview (or tksurfer). You should not confuse this with
>>> doing the fMRI analysis on the surface. You will not have the
>>> benefits of surface-based analysis
>>
>> On 02/15/2017 03:37 PM, Schoot, Lotte wrote:
>>> /Hi all, />//>/I was wondering if you knew of a way to display SPM
>>> results onto the />/inflated surface in Freesurfer. />//>/I have
>>> tried using SurfRend but there seem to be problems which might />/be
>>> due to the fact the results are obtained with SPM12 and SurfRend
>>> />/was designed to work with SPM5. />//>/Thanks, />/Lotte
>>> />//>//>/_______________________________________________
>>> />/Freesurfer mailing list />/Freesurfer at nmr.mgh.harvard.edu
>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/ >freesurfer
>> />/https://mail.nmr.mgh.harvard.edu/mailman/listinfo/ /freesurfer
>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve at nmr.mgh.harvard.edu
>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/ >freesurfer
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>>
>> _______________________________________________
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>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/ freesurfer
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