Dear Doug,

Thank you for your response. I am not sure I understand what I would be overlaying.

I would like to display the T1 volume for the subject, but for each voxel color value, I would like that to reflect the mean intensity value that I calculated using mri_segstats. I do not see a way to do this in freeview. Any pointers to further details would be greatly appreciated.

Best wishes,

Sal


On Fri, May 31, 2013 at 12:46 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
you can just specify an overlay on the freeview command line


On 05/31/2013 03:26 PM, Salil Soman wrote:
I have been able to generate the table. I was asking about an actual image (that could be visualized in freeview or something else).

Thank you.

-S


On Fri, May 31, 2013 at 12:25 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

    Do you mean table data or data that you have on a map?

    On 05/31/2013 03:20 PM, Salil Soman wrote:

        Dear Doug,

        Thank you for your recent advise with using freesurfer to
        extract mean values from non structural image data. Is there a
        way to generate an image (e.g. heat map) displaying those
        values in free view?

        Best wishes,

        Sal


    --     Douglas N. Greve, Ph.D.
    MGH-NMR Center
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