Dear Freesurfer experts,

Here are the commands I entered, and errors I received:

recon-all -subjid Test01 -i  /Testing/T1_MEMPRAGE_4/IM-0002-0206.dcm -autorecon1

#@# MotionCor Thu Aug 31 09:00:15 EDT 2017

Found 1 runs

/Users/amaksimovskiy/Desktop/Testing/Test01/mri/orig/001.mgz

Checking for (invalid) multi-frame inputs...

ERROR: input(s) cannot have multiple frames!

/Users/amaksimovskiy/Desktop/Testing/Test01/mri/orig/001.mgz has 4 frames

If this is a multi-frame MEMPRAGE image,

use mri_concat --rms to combine echo frames.

Could you please advice on how I can run the mri_concat --rms to combine echo frames? Also, would this have to be done before the autorecon1, and then reference the output (dicom or mgz?) into the recon-all command?

Thank you for your help and information.

- Arkadiy

-- 

Arkadiy L. Maksimovskiy, Ph.D.

Postdoctoral Research Fellow
McLean Imaging Center, McLean Hospital
Department of Psychiatry, Harvard Medical School