On 22 May 2017, at 09:49, Md. Mamun Al-Amin <mdalaminbadal@gmail.com> wrote:
I would appreciate if you please help me in this regard.Dear EugenioIt has been working very well. It stopped working suddenly. It produce two error containing text file within 10 seconds. I tried to install fresh matlab runtime2012b. However, I have not seen any change. The error is bumped as attached.
There are no output file except two errors that are saved in the Users/myuserid_directory/
<matlab_crash_dump.33234-1><matlab_crash_dump.33269-1>_______________________________________________
On Mon, May 22, 2017 at 5:39 PM, Iglesias Gonzalez, Eugenio <e.iglesias@ucl.ac.uk> wrote:
Thanks, Mamun.Do you bump into this error with every subject you process? Also, what’s the output before the error?Cheers,/Eugenio
Juan Eugenio IglesiasERC Senior Research Fellow
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/
On 20 May 2017, at 02:08, Md. Mamun Al-Amin <mdalaminbadal@gmail.com> wrote:
______________________________Hello FreeSurfer Developers, I'm attempting to compute hippocampal subfield segmentation. Unfortunatelty I found following errors.
------------------------------------------------------------ ------------
Segmentation violation detected at Sat May 20 10:45:37 2017
------------------------------------------------------------ ------------
Configuration:
Crash Decoding : Disabled
Current Visual : None
Default Encoding: ISO-8859-1
MATLAB Root : /Applications/freesurfer/MCRv80
MATLAB Version : 8.0.0.783 (R2012b)
Operating System: Darwin 16.5.0 Darwin Kernel Version 16.5.0: Fri Mar 3 16:52:33 PST 2017; root:xnu-3789.51.2~3/RELEASE_X86_64 x86_64
Processor ID : x86 Family 6 Model 58 Stepping 9, GenuineIntel
Window System : No active display
Fault Count: 1
Abnormal termination:
Segmentation violation
Register State (from fault):
RAX = 0000000000000000 RBX = 0000000103310000
RCX = 0000000000000006 RDX = 0000000103313a00
RSP = 000000010fc39e80 RBP = 000000d0ffffffff
RSI = ffffffffffffffff RDI = 0000000000000005
R8 = 0000000000000000 R9 = 0000000110323852
R10 = 0000700002d27480 R11 = 0000700002d274e0
R12 = 0000000000000005 R13 = 000000001c004121
R14 = 0000000000000246 R15 = 0000000110500160
RIP = 0000700002d27b98 RFL = 0000700002d27b60
CS = 000000010f91fd54 FS = 0000700002d27360 GS = 0000000000000005
Stack Trace (from fault):
[ 0] 0x0000000101e61e46 /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+ 00036422 _ZN2fl4diag15stacktrace_base7c aptureERKNS0_14thread_contextE m+000150
[ 1] 0x0000000101e62af1 /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+ 00039665 fl_diag_terminate+000321
[ 2] 0x0000000101e64c34 /Applications/freesurfer/MCRv80/bin/maci64/libmwfl.dylib+ 00048180 _ZN2fl4diag13terminate_logEPKc RKNS0_14thread_contextE+000100
[ 3] 0x0000000105ed825e /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+ 00315998 mnTrapCtrlc+000254
[ 4] 0x0000000105ed9d24 /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+ 00322852 _Z32mnRunPathDependentInitiali zationv+003492
[ 5] 0x0000000105eda13d /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+ 00323901 _Z32mnRunPathDependentInitiali zationv+004541
[ 6] 0x0000000105eda7f5 /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+ 00325621 _Z32mnRunPathDependentInitiali zationv+006261
[ 7] 0x0000000105eda945 /Applications/freesurfer/MCRv80/bin/maci64/libmwmcr.dylib+ 00325957 mnFatalSignalHandler+000149
[ 8] 0x00007fffa5b60b3a /usr/lib/system/libsystem_platform.dylib+00011066 _sigtramp+000026
[ 9] 0x00000004ffffffff /usr/lib/system/libsystem_platform.dylib+1844660335921084006 3
If this problem is reproducible, please submit a Service Request via:
http://www.mathworks.com/support/contact_us/
A technical support engineer might contact you with further information.
Thank you for your help.** This crash report has been saved to disk as /Users/mdmamunalamin/matlab_crash_dump.5756-1 **
MATLAB is exiting because of fatal error
/Applications/freesurfer/bin/run_segmentSubjectT1_autoEstima teAlveusML.sh: line 38: 5756 Killed: 9 "${exe_dir}"/segmentSubjectT1_ autoEstimateAlveusML.app/Conte nts/MacOS/segmentSubjectT1_aut oEstimateAlveusML $a
I would like to draw your kind attention regarding this.
--
Kind regards
Md. Mamun Al-Amin
------------------------------PhD Candidate, Queensland Brain Institute
Building 79, St Lucia QLD 4072_________________
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--
Kind regards
Md. Mamun Al-Amin
------------------------------PhD Candidate, Queensland Brain Institute
Building 79, St Lucia QLD 4072
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.