PHS009090:recon_unedited pnlmcleaneeg$ export FREESURFER_HOME=/Applications/freesurfer PHS009090:recon_unedited pnlmcleaneeg$ source $FREESURFER_HOME/SetUpFreeSurfer.sh -------- freesurfer-darwin-macOS-7.1.1-20200811-8b40551 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer FSFAST_HOME /Applications/freesurfer/fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer/subjects MNI_DIR /Applications/freesurfer/mni FSL_DIR /Applications/fsl PHS009090:recon_unedited pnlmcleaneeg$ export SUBJECTS_DIR=`pwd` PHS009090:recon_unedited pnlmcleaneeg$ echo $SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited PHS009090:recon_unedited pnlmcleaneeg$ PHS009090:recon_unedited pnlmcleaneeg$ for sub in sub-230_ses-01; do > echo $sub > for hemi in lh rh; do > > mri_surf2surf --srcsubject fsaverage5 --trgsubject $sub --hemi $hemi \ > --sval-annot fsaverage5/label/$hemi.Yeo2011_17Networks_N1000.annot \ > --tval $SUBJECTS_DIR/$sub/label/$hemi.Yeo2011_17Networks_N1000.annot > > mri_surf2surf --srcsubject fsaverage5 --trgsubject $sub --hemi $hemi \ > --sval-annot fsaverage5/label/$hemi.Yeo2011_17Networks_N1000.split_components.annot \ > --tval $SUBJECTS_DIR/$sub/label/$hemi.Yeo2011_17Networks_split.annot > > > #mris_anatomical_stats -th3 -mgz -a $sub/label/$hemi.Yeo2011_17Networks_N1000.annot -f $sub/stats/$hemi.Yeo_17Networks2.stats -b -c $sub/label/$hemi.Yeo_17Networks.annot.ctab $sub $hemi > > mris_anatomical_stats -th3 -mgz -cortex $sub/label/$hemi.cortex.label -a $sub/label/$hemi.Yeo2011_17Networks_N1000.annot -f $sub/stats/$hemi.Yeo_17Networks.stats -b -c $sub/label/$hemi.Yeo_17Networks.annot.ctab $sub $hemi white > > mris_anatomical_stats -th3 -mgz -cortex $sub/label/$hemi.cortex.label -a $sub/label/$hemi.Yeo2011_17Networks_split.annot -f $sub/stats/$hemi.Yeo_17Networks_split.stats -b -c $sub/label/$hemi.Yeo_17Networks_split.annot.ctab $sub $hemi white > > done > done sub-230_ses-01 Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-230_ses-01 --hemi lh --sval-annot fsaverage5/label/lh.Yeo2011_17Networks_N1000.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_N1000.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-230_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.orig reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (129232) Surf2Surf: Dividing by number of hits (129232) INFO: nSrcLost = 0 nTrg121 = 129232, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 0, nSrcLost = 0, nSrcMulti = 10242, MnSrcMultiHits = 12.6178 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_N1000.annot Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-230_ses-01 --hemi lh --sval-annot fsaverage5/label/lh.Yeo2011_17Networks_N1000.split_components.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_split.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-230_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_split.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = lh trghemi = lh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/lh.orig reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (129232) Surf2Surf: Dividing by number of hits (129232) INFO: nSrcLost = 0 nTrg121 = 129232, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 0, nSrcLost = 0, nSrcMulti = 10242, MnSrcMultiHits = 12.6178 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/lh.Yeo2011_17Networks_split.annot INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-230_ses-01/label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-230_ses-01/label/lh.Yeo2011_17Networks_N1000.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.white... Using TH3 vertex volume calc Total face volume 243697 Total vertex volume 239568 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.white... reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Saving annotation colortable sub-230_ses-01/label/lh.Yeo_17Networks.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/sub-230_ses-01/label/lh.Yeo2011_17Networks_N1000.annot atlas_icv (eTIV) = 1653062 mm^3 (det: 1.178483 ) 9347 6206 1831 0.856 1.334 0.082 0.025 91 8.1 FreeSurfer_Defined_Medial_Wall 11210 7550 16724 2.085 0.604 0.144 0.036 140 16.6 17Networks_1 7458 5116 9357 1.834 0.605 0.144 0.034 92 10.6 17Networks_2 10319 6748 14686 2.076 0.679 0.118 0.033 100 14.2 17Networks_3 7785 5286 13712 2.489 0.699 0.122 0.030 71 9.7 17Networks_4 7320 5049 12771 2.316 0.629 0.123 0.026 78 7.8 17Networks_5 5970 4048 10090 2.308 0.634 0.126 0.032 60 7.7 17Networks_6 7079 4880 14364 2.713 0.728 0.124 0.035 71 10.0 17Networks_7 5864 4086 12836 2.732 0.734 0.134 0.038 79 9.2 17Networks_8 4801 3468 15512 3.281 0.852 0.136 0.041 67 8.3 17Networks_9 4414 3171 12202 3.077 0.750 0.154 0.050 77 8.9 17Networks_10 2157 1502 3865 2.378 0.814 0.155 0.040 35 3.6 17Networks_11 8509 5889 15251 2.474 0.677 0.123 0.031 87 11.0 17Networks_12 6975 4832 14981 2.603 0.753 0.136 0.040 86 11.3 17Networks_13 3478 2422 8991 3.056 0.663 0.114 0.028 34 4.0 17Networks_14 2679 1862 5070 2.590 0.626 0.124 0.031 30 3.6 17Networks_15 10049 7063 22182 2.685 0.781 0.130 0.034 116 14.4 17Networks_16 13818 9690 35144 2.894 0.751 0.130 0.034 162 19.5 17Networks_17 INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-230_ses-01/label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-230_ses-01/label/lh.Yeo2011_17Networks_split.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.white... Using TH3 vertex volume calc Total face volume 243697 Total vertex volume 239568 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/lh.white... reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Saving annotation colortable sub-230_ses-01/label/lh.Yeo_17Networks_split.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/sub-230_ses-01/label/lh.Yeo2011_17Networks_split.annot atlas_icv (eTIV) = 1653062 mm^3 (det: 1.178483 ) 50994 34990 87776 2.252 1.133 0.123 0.033 593 66.9 Background+FreeSurfer_Defined_Medial_Wall 834 571 937 1.599 0.498 0.137 0.028 11 1.0 17Networks_LH_VisCent_Striate 7469 5022 11234 2.143 0.578 0.142 0.035 90 10.9 17Networks_LH_VisCent_ExStr 1507 1024 1408 1.518 0.409 0.142 0.032 17 2.2 17Networks_LH_VisPeri_Striate 1674 1140 2370 2.020 0.675 0.144 0.035 22 2.4 17Networks_LH_VisPeri_ExStrInf 1865 1310 2494 1.874 0.416 0.143 0.036 20 2.9 17Networks_LH_VisPeri_ExStrSup 8802 5728 12405 2.052 0.655 0.119 0.034 88 12.5 17Networks_LH_SomMotA 1784 1232 2415 1.955 0.615 0.124 0.031 15 2.5 17Networks_LH_SomMotB_Cent 1367 937 2677 2.825 0.547 0.131 0.034 13 1.8 17Networks_LH_SomMotB_S2 75 62 142 2.727 0.285 0.116 0.019 0 0.1 17Networks_LH_SomMotB_Ins 2076 1387 3453 2.423 0.564 0.104 0.022 16 1.9 17Networks_LH_SomMotB_Aud 1383 1013 2447 2.534 0.477 0.105 0.019 10 1.1 17Networks_LH_DorsAttnA_TempOcc 805 547 1377 2.289 0.646 0.132 0.035 9 1.1 17Networks_LH_DorsAttnA_ParOcc 2078 1399 3056 1.997 0.534 0.116 0.024 21 2.1 17Networks_LH_DorsAttnA_SPL 160 103 329 2.532 0.704 0.140 0.036 2 0.2 17Networks_LH_DorsAttnB_TempOcc 2204 1456 3557 2.287 0.580 0.138 0.039 24 3.6 17Networks_LH_DorsAttnB_PostC 1042 733 1531 2.329 0.584 0.103 0.020 6 0.9 17Networks_LH_DorsAttnB_FEF 78 54 170 2.511 0.584 0.119 0.024 1 0.1 17Networks_LH_DorsAttnB_PrCv 773 566 1554 2.458 0.608 0.181 0.064 13 2.4 17Networks_LH_SalVentAttnA_ParOper 713 490 1963 3.027 0.642 0.131 0.044 11 1.1 17Networks_LH_SalVentAttnA_PrCv 998 675 2107 3.102 0.782 0.100 0.028 7 1.0 17Networks_LH_SalVentAttnA_Ins 704 492 803 2.069 0.365 0.107 0.016 3 0.6 17Networks_LH_SalVentAttnA_ParMed 1006 689 2071 2.837 0.680 0.129 0.035 11 1.5 17Networks_LH_SalVentAttnA_FrMed 115 72 261 2.925 0.455 0.155 0.065 3 0.2 17Networks_LH_SalVentAttnB_IPL 48 31 139 3.037 0.574 0.122 0.032 0 0.1 17Networks_LH_SalVentAttnB_PFCd 1646 1151 3509 2.538 0.698 0.130 0.042 25 2.8 17Networks_LH_SalVentAttnB_PFCl 625 440 1312 3.203 0.684 0.113 0.025 4 0.7 17Networks_LH_SalVentAttnB_PFCv 109 84 293 2.735 0.481 0.204 0.062 3 0.4 17Networks_LH_SalVentAttnB_OFC 630 432 1170 2.684 0.714 0.124 0.025 7 0.6 17Networks_LH_SalVentAttnB_PFCmp 3763 2731 12339 3.244 0.859 0.134 0.040 51 6.4 17Networks_LH_Limbic_TempPole 3396 2463 9415 3.085 0.735 0.160 0.053 62 7.4 17Networks_LH_Limbic_OFC 542 370 1562 3.231 0.740 0.153 0.045 10 0.8 17Networks_LH_ContA_Temp 1202 792 1815 2.381 0.624 0.122 0.031 10 1.5 17Networks_LH_ContA_IPS 188 140 279 2.476 0.477 0.106 0.025 1 0.2 17Networks_LH_ContA_PFCd 1944 1345 3002 2.457 0.547 0.110 0.025 14 1.7 17Networks_LH_ContA_PFCl 638 433 948 2.246 0.468 0.125 0.033 7 1.1 17Networks_LH_ContA_PFClv 74 39 66 2.446 0.961 0.197 0.032 2 0.1 17Networks_LH_ContA_Cinga 307 218 786 3.220 0.672 0.141 0.054 4 0.7 17Networks_LH_ContB_Temp 779 524 1619 2.578 0.749 0.127 0.040 8 1.1 17Networks_LH_ContB_IPL 117 76 275 2.642 0.538 0.170 0.074 2 0.4 17Networks_LH_ContB_PFCd 812 551 2025 2.893 0.732 0.134 0.039 12 1.1 17Networks_LH_ContB_PFCl 1165 819 2252 2.241 0.708 0.145 0.039 16 1.9 17Networks_LH_ContB_PFClv 82 57 136 2.362 0.686 0.119 0.024 0 0.1 17Networks_LH_ContB_PFCmp 764 532 1433 2.277 0.508 0.152 0.036 11 1.2 17Networks_LH_ContC_pCun 312 203 355 2.452 0.927 0.195 0.052 10 0.6 17Networks_LH_ContC_Cingp 1020 694 2408 2.783 0.808 0.128 0.028 12 1.2 17Networks_LH_DefaultA_IPL 1506 1054 2697 2.595 0.574 0.097 0.020 6 1.3 17Networks_LH_DefaultA_PFCd 1920 1358 3697 2.539 0.625 0.141 0.036 21 3.0 17Networks_LH_DefaultA_PCC 2354 1702 5938 2.799 0.959 0.143 0.042 34 4.2 17Networks_LH_DefaultA_PFCm 3481 2466 8901 3.022 0.657 0.126 0.031 37 4.6 17Networks_LH_DefaultB_Temp 967 657 1891 2.457 0.729 0.113 0.020 8 0.8 17Networks_LH_DefaultB_IPL 2557 1762 7047 3.132 0.724 0.136 0.044 32 4.6 17Networks_LH_DefaultB_PFCd 527 366 971 2.326 0.609 0.121 0.035 5 0.8 17Networks_LH_DefaultB_PFCl 2101 1463 5830 2.843 0.722 0.144 0.036 30 3.1 17Networks_LH_DefaultB_PFCv 75 54 117 2.235 0.284 0.073 0.013 0 0.0 17Networks_LH_DefaultC_IPL 227 171 431 2.764 0.533 0.174 0.047 3 0.5 17Networks_LH_DefaultC_Rsp 958 665 1814 2.553 0.610 0.101 0.020 7 0.7 17Networks_LH_DefaultC_PHC 1890 1334 4560 2.998 0.604 0.104 0.023 15 1.7 17Networks_LH_TempPar Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-230_ses-01 --hemi rh --sval-annot fsaverage5/label/rh.Yeo2011_17Networks_N1000.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_N1000.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-230_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_N1000.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.orig reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (129846) Surf2Surf: Dividing by number of hits (129846) INFO: nSrcLost = 1 nTrg121 = 129846, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 1, nSrcLost = 1, nSrcMulti = 10241, MnSrcMultiHits = 12.6789 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_N1000.annot Setting mapmethod to nnf 7.1.1 setenv SUBJECTS_DIR /Volumes/SY_MRI/freesurfer/recon_unedited cd /Volumes/SY_MRI/freesurfer/recon_unedited mri_surf2surf --srcsubject fsaverage5 --trgsubject sub-230_ses-01 --hemi rh --sval-annot fsaverage5/label/rh.Yeo2011_17Networks_N1000.split_components.annot --tval /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_split.annot sysname Darwin hostname PHS009090 machine x86_64 user pnlmcleaneeg srcsubject = fsaverage5 srcval = (null) srctype = trgsubject = sub-230_ses-01 trgval = /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_split.annot trgtype = srcsurfreg = sphere.reg trgsurfreg = sphere.reg srchemi = rh trghemi = rh frame = 0 fwhm-in = 0 fwhm-out = 0 label-src = (null) label-trg = (null) OKToRevFaceOrder = 1 UseDualHemi = 0 Reading source surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.sphere.reg Loading source data Reading surface file /Volumes/SY_MRI/freesurfer/recon_unedited/fsaverage5/surf/rh.orig reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Reading target surface reg /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.sphere.reg Done Using surf2surf_nnfr() Mapping Source Volume onto Source Subject Surface surf2surf_nnfr: building source hash (res=16). Surf2Surf: Forward Loop (129846) Surf2Surf: Dividing by number of hits (129846) INFO: nSrcLost = 1 nTrg121 = 129846, nTrgMulti = 0, MnTrgMultiHits = 0 nSrc121 = 1, nSrcLost = 1, nSrcMulti = 10241, MnSrcMultiHits = 12.6789 Saving target data Converting to target annot Saving to target annot /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/rh.Yeo2011_17Networks_split.annot INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-230_ses-01/label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-230_ses-01/label/rh.Yeo2011_17Networks_N1000.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.white... Using TH3 vertex volume calc Total face volume 241449 Total vertex volume 237598 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.white... reading colortable from annotation file... colortable with 18 entries read (originally MyColorLUT) Saving annotation colortable sub-230_ses-01/label/rh.Yeo_17Networks.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/sub-230_ses-01/label/rh.Yeo2011_17Networks_N1000.annot atlas_icv (eTIV) = 1653062 mm^3 (det: 1.178483 ) 8950 6183 1760 0.884 1.440 0.085 0.026 70 8.6 FreeSurfer_Defined_Medial_Wall 12040 7898 18432 2.144 0.614 0.138 0.035 147 17.1 17Networks_1 8800 5860 10817 1.858 0.557 0.145 0.039 116 14.1 17Networks_2 10281 6529 14472 2.119 0.693 0.109 0.029 96 12.4 17Networks_3 7305 4883 13104 2.596 0.704 0.120 0.030 67 8.5 17Networks_4 7399 5085 13599 2.500 0.701 0.123 0.030 75 8.4 17Networks_5 6057 4149 10641 2.383 0.652 0.128 0.035 74 8.8 17Networks_6 7432 5056 15664 2.745 0.730 0.121 0.033 82 9.9 17Networks_7 7998 5691 16739 2.510 0.713 0.132 0.035 97 11.3 17Networks_8 5009 3538 15754 3.448 0.801 0.131 0.038 57 8.0 17Networks_9 3950 2783 10559 2.820 0.868 0.142 0.043 66 6.8 17Networks_10 2846 1912 4873 2.238 0.837 0.147 0.035 47 3.5 17Networks_11 6847 4701 11853 2.431 0.711 0.123 0.032 72 9.4 17Networks_12 10722 7462 23850 2.543 0.787 0.140 0.039 154 17.5 17Networks_13 4740 3326 10620 2.871 0.647 0.123 0.030 50 5.8 17Networks_14 2578 1742 5047 2.670 0.766 0.128 0.032 29 3.2 17Networks_15 10934 7580 23720 2.593 0.752 0.141 0.041 162 18.4 17Networks_16 5958 4219 16093 2.964 0.760 0.141 0.042 84 10.6 17Networks_17 INFO: using TH3 volume calc INFO: assuming MGZ format for volumes. INFO: using sub-230_ses-01/label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. computing statistics for each annotation in sub-230_ses-01/label/rh.Yeo2011_17Networks_split.annot. reading volume /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/mri/wm.mgz... reading input surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.white... Using TH3 vertex volume calc Total face volume 241449 Total vertex volume 237598 (mask=0) reading input pial surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.pial... reading input white surface /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/surf/rh.white... reading colortable from annotation file... colortable with 115 entries read (originally MyColorLUT) Saving annotation colortable sub-230_ses-01/label/rh.Yeo_17Networks_split.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name ERROR: stating file /Volumes/SY_MRI/freesurfer/recon_unedited/sub-230_ses-01/label/sub-230_ses-01/label/rh.Yeo2011_17Networks_split.annot atlas_icv (eTIV) = 1653062 mm^3 (det: 1.178483 ) 50845 34853 88080 2.284 1.143 0.126 0.036 637 73.5 Background+FreeSurfer_Defined_Medial_Wall 850 533 968 1.845 0.495 0.156 0.043 16 1.6 17Networks_RH_VisCent_Striate 8522 5625 13128 2.159 0.603 0.135 0.033 93 11.4 17Networks_RH_VisCent_ExStr 1161 812 1116 1.616 0.383 0.133 0.033 11 1.6 17Networks_RH_VisPeri_Striate 2168 1479 2880 1.906 0.544 0.156 0.050 34 4.4 17Networks_RH_VisPeri_ExStrInf 2684 1745 3289 1.818 0.471 0.132 0.028 28 3.1 17Networks_RH_VisPeri_ExStrSup 8695 5472 12029 2.085 0.697 0.107 0.028 77 10.2 17Networks_RH_SomMotA 1735 1172 2444 2.140 0.643 0.116 0.027 13 2.1 17Networks_RH_SomMotB_Cent 1265 852 2436 2.948 0.612 0.128 0.037 13 1.7 17Networks_RH_SomMotB_S2 106 70 176 2.654 0.662 0.127 0.021 1 0.1 17Networks_RH_SomMotB_Ins 1842 1198 3354 2.581 0.532 0.121 0.029 18 2.0 17Networks_RH_SomMotB_Aud 1425 1004 3100 2.916 0.535 0.116 0.028 12 1.5 17Networks_RH_DorsAttnA_TempOcc 773 542 1256 2.409 0.528 0.128 0.032 7 0.9 17Networks_RH_DorsAttnA_ParOcc 2118 1424 3147 2.032 0.558 0.124 0.029 25 2.4 17Networks_RH_DorsAttnA_SPL 88 81 200 2.083 0.302 0.163 0.041 2 0.2 17Networks_RH_DorsAttnB_TempOcc 2238 1542 3789 2.317 0.637 0.132 0.036 27 3.2 17Networks_RH_DorsAttnB_PostC 920 648 1467 2.387 0.584 0.098 0.020 5 0.8 17Networks_RH_DorsAttnB_FEF 215 135 368 2.574 0.614 0.123 0.025 3 0.2 17Networks_RH_DorsAttnB_PrCv 937 652 2062 2.780 0.786 0.138 0.051 14 2.0 17Networks_RH_SalVentAttnA_ParOper 175 96 484 3.486 0.616 0.120 0.062 2 0.4 17Networks_RH_SalVentAttnA_PrC 654 437 1587 2.859 0.483 0.104 0.022 6 0.6 17Networks_RH_SalVentAttnA_PrCv 927 669 2068 3.134 0.765 0.104 0.023 7 0.9 17Networks_RH_SalVentAttnA_Ins 596 421 722 2.119 0.501 0.119 0.021 4 0.5 17Networks_RH_SalVentAttnA_ParMed 995 698 2107 2.562 0.537 0.132 0.032 14 1.2 17Networks_RH_SalVentAttnA_FrMed 314 240 717 2.468 0.768 0.148 0.031 4 0.4 17Networks_RH_SalVentAttnB_IPL 169 119 316 2.551 0.466 0.121 0.019 1 0.2 17Networks_RH_SalVentAttnB_PFCd 2071 1474 4160 2.345 0.641 0.139 0.039 25 3.4 17Networks_RH_SalVentAttnB_PFCl 280 198 633 2.438 0.612 0.162 0.045 7 0.5 17Networks_RH_SalVentAttnB_PFClv 1063 757 1947 2.687 0.581 0.106 0.020 6 0.9 17Networks_RH_SalVentAttnB_PFCv 566 409 1117 2.612 0.757 0.117 0.022 4 0.5 17Networks_RH_SalVentAttnB_PFCmp 44 28 39 1.888 0.302 0.201 0.019 1 0.0 17Networks_RH_SalVentAttnB_Cinga 3976 2816 12632 3.399 0.801 0.127 0.036 43 5.9 17Networks_RH_Limbic_TempPole 2933 2066 8072 2.848 0.877 0.144 0.045 49 5.3 17Networks_RH_Limbic_OFC 250 173 684 3.192 0.488 0.138 0.030 4 0.3 17Networks_RH_ContA_Temp 882 572 1327 2.289 0.556 0.123 0.031 9 0.9 17Networks_RH_ContA_IPS 105 73 156 2.463 0.365 0.096 0.020 0 0.1 17Networks_RH_ContA_PFCd 2201 1523 3228 2.327 0.609 0.106 0.024 13 2.2 17Networks_RH_ContA_PFCl 49 26 19 1.343 0.286 0.107 0.017 1 0.0 17Networks_RH_ContA_Cinga 866 586 1934 2.928 0.642 0.128 0.032 10 1.1 17Networks_RH_ContB_Temp 1019 680 2224 2.572 0.765 0.136 0.039 16 1.2 17Networks_RH_ContB_IPL 2117 1487 4842 2.501 0.773 0.138 0.036 25 3.0 17Networks_RH_ContB_PFCld 2308 1619 4836 2.336 0.799 0.160 0.048 47 5.2 17Networks_RH_ContB_PFClv 270 182 564 2.893 0.624 0.123 0.030 2 0.3 17Networks_RH_ContB_PFCmp 1066 723 2028 2.368 0.728 0.151 0.038 15 1.5 17Networks_RH_ContC_pCun 432 258 332 1.686 0.843 0.157 0.027 9 0.5 17Networks_RH_ContC_Cingp 331 243 903 2.820 0.568 0.144 0.039 7 0.5 17Networks_RH_DefaultA_Temp 1231 898 2793 2.527 0.695 0.146 0.041 17 2.0 17Networks_RH_DefaultA_IPL 1236 867 2086 2.313 0.595 0.125 0.035 12 1.8 17Networks_RH_DefaultA_PFCd 1744 1221 3531 2.556 0.672 0.146 0.040 22 2.8 17Networks_RH_DefaultA_PCC 2758 1850 6305 2.625 0.831 0.136 0.041 39 4.6 17Networks_RH_DefaultA_PFCm 437 313 1172 3.176 0.640 0.126 0.031 5 0.6 17Networks_RH_DefaultB_Temp 518 389 1846 3.302 0.872 0.166 0.052 8 1.1 17Networks_RH_DefaultB_AntTemp 1363 927 3447 2.906 0.798 0.130 0.043 17 2.3 17Networks_RH_DefaultB_PFCd 819 572 2330 2.900 0.703 0.155 0.047 15 1.4 17Networks_RH_DefaultB_PFCv 149 108 358 2.929 0.460 0.157 0.028 2 0.3 17Networks_RH_DefaultC_IPL 482 319 656 2.385 0.626 0.146 0.038 6 0.9 17Networks_RH_DefaultC_Rsp 518 371 1061 2.547 0.853 0.095 0.015 3 0.3 17Networks_RH_DefaultC_PHC 3345 2350 7049 2.831 0.645 0.117 0.027 28 3.8 17Networks_RH_TempPar PHS009090:recon_unedited pnlmcleaneeg$