On 16 Jun 2020, at 11:56 pm, Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

Can you upload the subject so I can take a look? Instructions below


From the linux command line,
Create the file you want to upload, eg, 
cd $SUBJECTS_DIR
tar cvfz subject.tar.gz ./subject
Now log  into our anonymous FTP site:
ftp surfer.nmr.mgh.harvard.edu
It will ask you for a user name: use "anonymous" (no quotes)
It will ask you for a password: use "anonymous" (no quotes)
cd transfer/incoming
binary
put subject.tar.gz
Send an email that the file has been and the name of the file.

On 6/15/2020 8:28 PM, Yann Quidé wrote:

        External Email - Use Caution        

Hi there,

I am using Freesurfer v7.1.0 and encounter an error for few of my subjects only.
Recon-all finishes with errors, and it seems this occurs during the segmentation.

What can I do to fix this?

I attached the recon-all log for one of my subject.

Thanks,

Yann

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_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer