Hello,

I successfully created a new subcortical atlas for the cerebellum (at least I think I did--not sure how to check it without running a new segmentation). If I want to apply this to many brains, I think I want to run:

recon-all -subcortseg -subjid <subject name>

How do I tell it to call, e.g., RB_all_withskull_2012-04-13.gca instead of e.g., RB_all_withskull_2008-03-26.gca.

Basically, I want to apply the new cerebellar parcellation to existing freesurfed brains.

Anthony

-- 
Anthony Steven Dick, Ph.D.  
Assistant Professor  
Department of Psychology  
Florida International University  
Modesto A. Maidique Campus DM 296B  
11200 S.W. 8th Street  
Miami, FL 33199  
Phone: 305-348-4202 (try this first)
Lab Phone: 305-348-9057 or 305-348-9055
Fax: 305-348-3879  
Email: adick@fiu.edu  
Webpage: http://www.fiu.edu/~adick 
Lab Webpage: http://dcn.fiu.edu