Last login: Thu May 19 09:45:10 on ttys000 dcnmac75:~ clareloane$ export FREESURFER_HOME=/Applications/freesurfer/ dcnmac75:~ clareloane$ source /Applications/freesurfer/SetUpFreeSurfer.sh -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/ FSFAST_HOME /Applications/freesurfer//fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer//subjects MNI_DIR /Applications/freesurfer//mni FSL_DIR /usr/local/fsl dcnmac75:~ clareloane$ SUBJECTS_DIR=/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec dcnmac75:~ clareloane$ cd $SUBJECTS_DIR dcnmac75:qdec clareloane$ pwd /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec dcnmac75:qdec clareloane$ pico mydata.table.dat dcnmac75:qdec clareloane$ pico Gender.levels dcnmac75:qdec clareloane$ dcnmac75:qdec clareloane$ pico Group.levels dcnmac75:qdec clareloane$ qdec Reading /Applications/freesurfer/tktools/tkUtils.tcl Using /Applications/freesurfer//lib/tcl/fsgdfPlot.tcl Loading data table /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/mydata.table.dat... QdecDataTable::Load: will attempt to open as Mac text file... Number of columns: 4 fsid column: 1 Number of factors: 3 Number of subjects: 48 Reading discrete factor levels from config file /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/Group.levels Control Patient done. Reading discrete factor levels from config file /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/Gender.levels Last login: Thu May 19 09:45:10 on ttys000 dcnmac75:~ clareloane$ export FREESURFER_HOME=/Applications/freesurfer/ dcnmac75:~ clareloane$ source /Applications/freesurfer/SetUpFreeSurfer.sh -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- Setting up environment for FreeSurfer/FS-FAST (and FSL) FREESURFER_HOME /Applications/freesurfer/ FSFAST_HOME /Applications/freesurfer//fsfast FSF_OUTPUT_FORMAT nii.gz SUBJECTS_DIR /Applications/freesurfer//subjects MNI_DIR /Applications/freesurfer//mni FSL_DIR /usr/local/fsl dcnmac75:~ clareloane$ SUBJECTS_DIR=/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec dcnmac75:~ clareloane$ cd $SUBJECTS_DIR dcnmac75:qdec clareloane$ pwd /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec dcnmac75:qdec clareloane$ pico mydata.table.dat dcnmac75:qdec clareloane$ pico Gender.levels GNU nano 2.0.6 File: Gender.levels Male Female [ XOFF ignored, mumble mumble ] ^G Get Help ^O WriteOut ^R Read File ^Y Prev Page ^K Cut Text ^C Cur Pos ^X Exit ^J Justify ^W Where Is ^V Next Page ^U UnCut Text^T To Spell done. Data table /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/mydata.table.dat loaded. Verifying subject data................................................Subject verification complete. Input table: /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec/mydata.table.dat Subj#, SubjID, Data... 1 OXCON_005 Control 0.110000 Male 2 OXCON_009 Control 2.110000 Male 3 OXCON_012 Control -38.890000 Female 4 OXCON_025 Control -4.890000 Male 5 OXCON_026 Control 5.110000 Female 6 OXCON_028 Control 8.110000 Male 7 OXCON_029 Control -16.890000 Female 8 OXCON_031 Control 5.110000 Male 9 OXCON_034 Control 7.110000 Male 10 OXCON_040 Control 3.110000 Female 11 OXCON_042 Control 3.110000 Female 12 OXCON_052 Control -5.890000 Female 13 OXCON_053 Control 8.110000 Male 14 OXCON_054 Control 17.110000 Male 15 OXCON_055 Control 6.110000 Male 16 OXCON_056 Control 13.110000 Male 17 OXCON_058 Control 11.110000 Male 18 OXCON_059 Control 6.110000 Female 19 OXCON_060 Control -35.890000 Female 20 OXCON_061 Control -3.890000 Male 21 OXCON_062 Control -27.890000 Male 22 OXCON_064 Control 6.110000 Female 23 OXCON_065 Control 3.110000 Female 24 OXCON_066 Control -24.890000 Male 25 OXCON_067 Control -12.890000 Male 26 PAT_004 Patient 13.110000 Male 27 PAT_007 Patient 15.110000 Female 28 PAT_008 Patient 8.110000 Male 29 PAT_010 Patient -7.890000 Female 30 PAT_013 Patient 10.110000 Female 31 PAT_015 Patient 8.110000 Male 32 PAT_016 Patient 4.110000 Male 33 PAT_020 Patient 6.110000 Male 34 PAT_022 Patient 16.110000 Male 35 PAT_035 Patient 18.110000 Female 36 PAT_036 Patient -3.890000 Male 37 PAT_041 Patient 14.110000 Female 38 PAT_043 Patient -3.890000 Male 39 PAT_045 Patient -14.890000 Male 40 PAT_046 Patient 17.110000 Male 41 PAT_048 Patient -6.890000 Male 42 PAT_049 Patient -3.890000 Female 43 PAT_050 Patient -23.890000 Male 44 PAT_057 Patient 4.110000 Male 45 PAT_068 Patient 20.110000 Male 46 PAT_069 Patient -6.890000 Male 47 PAT_070 Patient -2.890000 Male 48 PAT_074 Patient -5.890000 Male 1 Group discrete 2 1 Control 2 Patient 2 Age continuous 0 3 Gender discrete 23 1 Last login: Thu May 19 09:45:10 on ttys000 2 dcnmac75:~ clareloane$ export FREESURFER_HOME=/Applications/freesurfer/ 3 dcnmac75:~ clareloane$ source /Applications/freesurfer/SetUpFreeSurfer.sh 4 -------- freesurfer-Darwin-lion-stable-pub-v5.3.0 -------- 5 Setting up environment for FreeSurfer/FS-FAST (and FSL) 6 FREESURFER_HOME /Applications/freesurfer/ 7 FSFAST_HOME /Applications/freesurfer//fsfast 8 FSF_OUTPUT_FORMAT nii.gz 9 SUBJECTS_DIR /Applications/freesurfer//subjects 10 MNI_DIR /Applications/freesurfer//mni 11 FSL_DIR /usr/local/fsl 12 dcnmac75:~ clareloane$ SUBJECTS_DIR=/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec 13 dcnmac75:~ clareloane$ cd $SUBJECTS_DIR 14 dcnmac75:qdec clareloane$ pwd 15 /Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec 16 dcnmac75:qdec clareloane$ pico mydata.table.dat 17 dcnmac75:qdec clareloane$ pico Gender.levels 18 GNU nano 2.0.6 File: Gender.levels 19 Male 20 Female 21 [ XOFF ignored, mumble mumble ] 22 ^G Get Help ^O WriteOut ^R Read File ^Y Prev Page ^K Cut Text ^C Cur Pos 23 ^X Exit ^J Justify ^W Where Is ^V Next Page ^U UnCut Text^T To Spell Continuous Factors: Mean: StdDev: ------------------- ----- ------- Age 0.131 13.774 Number of subjects: 48 Number of factors: 3 (2 discrete, 1 continuous) Number of classes: 46 Number of regressors: 92 ============================================================ Data table loading completed successfully. SUBJECTS_DIR is '/Users/clareloane/Desktop/MAP/Image_Analysis/Volumetrics/Freesurfer/qdec' ERROR: QdecGlmDesign::Create: zero factors!