Is it possible to use quantifyHAsubregions.sh to write out the three different hippocampal subfield outputs ?
HBT: the hippocampus is subdivided into head, body and tail.
FS60: it mimics the FreeSurfer 6.0 hippocampal module, i.e., no head/body subdivision for the hippocampal subregions.
CA:
the "internal" labels (GC-ML-DG and molecular layer) are absorbed by
the CA subfields: GC-ML-DG is absorbed by CA4, and the voxels in the
molecular layer are assigned the label of the closest voxel that is
neither molecular layer nor background