Hi Ahsan,

You can find information on the Freesurfer wiki.

https://surfer.nmr.mgh.harvard.edu/fswiki/

There are tutorial videos here:

https://surfer.nmr.mgh.harvard.edu/fswiki/TeachYourselfFreeSurfer

Best,

Yujing

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Ahsan Ali
Sent: Tuesday, March 28, 2023 1:47 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Manual of Freesurfer to Learn the Software from Zero to advanced Level

        External Email - Use Caution        

Dear Sir,

I've been learning Freesurfer software for a long time but still, I couldn't understand its basics and how a freesurfer actually works. I am always searching all the terms from the freesurfer web page but not getting exactly how it works. It will be a great help from your side for me if you can provide me the manual of freesurfer. 

Such as how the folders are generated and in each folder (ex. MRI folder-auto.mgz, aparc+aseg.mgz files) file is getting generated.  

Thank You.

Regards,

Ahsan