Dear Freesurfer experts,

I ran recon-all on 100 subjects. Around 20 of them needed manual corrections of the pial surface on the brainmask.mgz.

1.) Can I run the command: "recon-all -make all- s <subject>" on all 100 subjects and it will only recon-all the manually edited ones or do I need to run it individually for the 20 subjects?

2.) Do I need to add the flags which I used for the original recon-all command to the "recon-all -make all- s <subject>, e.g. -qcache -T3 -hippocampal subfields etc?

Many thanks!

/Ben

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