Fri May 14 15:52:27 EDT 2021
/home/helena/Documents/freesurfer/subjects
/home/helena/Documents/freesurfer/bin/trac-all
-prep -c Config_50.txt
Subject 50
SUBJECTS_DIR /home/helena/Documents/freesurfer/subjects
FREESURFER_HOME /home/helena/Documents/freesurfer
Actual FREESURFER_HOME /home/helena/Documents/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c
helena
VENEU313BU
Linux VENEU313BU 4.15.0-142-generic #146~16.04.1-Ubuntu SMP Tue Apr 13 09:27:15 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024 
memorylocked 64 kbytes
maxproc      256777 
maxlocks     unlimited
maxsignal    256777 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

              total        used        free      shared  buff/cache   available
Mem:       65806848    10088932     8698336      124616    47019580    54777948
Swap:        999420           0      999420

########################################
Program versions:
$Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $
mri_convert.bin --all-info 
ProgramName: mri_convert.bin  ProgramArguments: --all-info  ProgramVersion: $Name: stable6 $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $  User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
FLIRT version 6.0
$Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $
$Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $
ProgramName: dmri_motion  ProgramArguments: --all-info  ProgramVersion: $Name: stable6 $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: dmri_train  ProgramArguments: --all-info  ProgramVersion: $Name: stable6 $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: dmri_paths  ProgramArguments: --all-info  ProgramVersion: $Name:  $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: dmri_pathstats  ProgramArguments: --all-info  ProgramVersion: $Name: stable6 $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: dmri_mergepaths  ProgramArguments: --all-info  ProgramVersion: $Name: stable6 $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 
ProgramName: dmri_group  ProgramArguments: --all-info  ProgramVersion: $Name:  $  TimeStamp: 2021/05/14-19:52:27-GMT  BuildTimeStamp: Jan 18 2017 16:38:58  CVS:   User: helena  Machine: VENEU313BU  Platform: Linux  PlatformVersion: 4.15.0-142-generic  CompilerName: GCC  CompilerVersion: 40400 


New invocation of trac-preproc


helena
VENEU313BU
Linux VENEU313BU 4.15.0-142-generic #146~16.04.1-Ubuntu SMP Tue Apr 13 09:27:15 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024 
memorylocked 64 kbytes
maxproc      256777 
maxlocks     unlimited
maxsignal    256777 
maxmessage   819200 
maxnice      0 
maxrtprio    0 
maxrttime    unlimited

              total        used        free      shared  buff/cache   available
Mem:       65806848    10089504     8697764      124616    47019580    54777376
Swap:        999420           0      999420

#-------------------------------------
/home/helena/Documents/freesurfer/bin/trac-preproc 
#-------------------------------------
#@# Image corrections Fri May 14 15:52:27 EDT 2021
mri_convert --bvec-voxel /home/helena/Documents/freesurfer/subjects/50/DICOM_WIP_111_DTI66d_2mm_SF3_SENSE_20191115131647_1201.nii /home/helena/Documents/freesurfer/subjects/50/dmri/dwi_orig.nii.gz
mri_convert.bin --bvec-voxel /home/helena/Documents/freesurfer/subjects/50/DICOM_WIP_111_DTI66d_2mm_SF3_SENSE_20191115131647_1201.nii /home/helena/Documents/freesurfer/subjects/50/dmri/dwi_orig.nii.gz 
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /home/helena/Documents/freesurfer/subjects/50/DICOM_WIP_111_DTI66d_2mm_SF3_SENSE_20191115131647_1201.nii...
TR=4401.88, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-0.999753, 0.010865, -0.0193732)
j_ras = (0.00644603, 0.976582, 0.215047)
k_ras = (-0.0212561, -0.214869, 0.976411)
writing to /home/helena/Documents/freesurfer/subjects/50/dmri/dwi_orig.nii.gz...
cp /home/helena/Documents/freesurfer/subjects/50/bvecs_50.txt /home/helena/Documents/freesurfer/subjects/50/dmri/dwi_orig.bvecs
cp /home/helena/Documents/freesurfer/subjects/50/bvals.txt /home/helena/Documents/freesurfer/subjects/50/dmri/dwi_orig.bvals