setenv SUBJECTS_DIR /home/helena/Documents/freesurfer/subjects
set dtroot = /home/helena/Documents/freesurfer/subjects
set subjlist = 50
		
set dcmlist =  $SUBJECTS_DIR/50/DICOM_WIP_111_DTI66d_2mm_SF3_SENSE_20191115131647_1201.nii
    
set bveclist = $SUBJECTS_DIR/50/bvecs_50.txt
	   
set bvallist = $SUBJECTS_DIR/50/bvals.txt



set runlist = 1
set doeddy = 1
set dorotbvecs = 1
set usemaskanat = 1
set thrbet = 0.3
set doregflt = 0
set doregbbr = 1
set doregmni = 1
set doregcvs = 0
set pathlist = ( lh.cst_AS rh.cst_AS \
                 lh.ilf_AS rh.ilf_AS \
                 lh.unc_AS rh.unc_AS \
                 fmajor_PP fminor_PP \
                 lh.atr_PP rh.atr_PP \
                 lh.cab_PP rh.cab_PP \
                 lh.ccg_PP rh.ccg_PP \
                 lh.slfp_PP rh.slfp_PP \
                 lh.slft_PP rh.slft_PP )

set ncpts = (6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5)