We produce 3 cortical parcellations based on different manual labelings. They should be named *parc*.annot in the subject’s label dir.

Cheers

Bruce

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of 1248742467
Sent: Tuesday, June 15, 2021 2:36 AM
To: freesurfer <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] which file is freesurfer autoseg result?

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hello, FS

I do the brain region parcellation, I have label(ground truth) for each subject. I want to use my own neural network segmentation results and Freesurfer automatic segmentation results comparison, to get a qualitative and quantitative results? Which file in the label folder is the result of automatic segmentation? And how do I get quantitative results?

As seen in some articles, the result of automatic segmentation by Freesurfer is 84.39 for DICE and 85.19 for ACC.