Dear ZK,

I have done md5sum check. I got the following message. How to confirm it is complete or not?

pc@RB:~/Downloads$ md5sum freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz
5362fc776145b06ded219f42af4a8207  freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

Thanks

RB

On Thu, Apr 20, 2017 at 7:32 PM, Z K <zkaufman@nmr.mgh.harvard.edu> wrote:

I just did a test by downloading and extracting the tar, and I got all
the expected files:

/usr/local/fstemp/freesurfer/tkmeditParcColorsCMA
/usr/local/fstemp/freesurfer/mni
/usr/local/fstemp/freesurfer/sources.csh
/usr/local/fstemp/freesurfer/docs
/usr/local/fstemp/freesurfer/Simple_surface_labels2009.txt
/usr/local/fstemp/freesurfer/NOTICE
/usr/local/fstemp/freesurfer/FreeSurferColorLUT.txt
/usr/local/fstemp/freesurfer/DefectLUT.txt
/usr/local/fstemp/freesurfer/subjects
/usr/local/fstemp/freesurfer/LICENSE
/usr/local/fstemp/freesurfer/fsafd
/usr/local/fstemp/freesurfer/ASegStatsLUT.txt
/usr/local/fstemp/freesurfer/diffusion
/usr/local/fstemp/freesurfer/average
/usr/local/fstemp/freesurfer/bin
/usr/local/fstemp/freesurfer/SetUpFreeSurfer.sh
/usr/local/fstemp/freesurfer/SegmentNoLUT.txt
/usr/local/fstemp/freesurfer/README
/usr/local/fstemp/freesurfer/sources.sh
/usr/local/fstemp/freesurfer/data
/usr/local/fstemp/freesurfer/SetUpFreeSurfer.csh
/usr/local/fstemp/freesurfer/tktools
/usr/local/fstemp/freesurfer/FreeSurferEnv.sh
/usr/local/fstemp/freesurfer/fsfast
/usr/local/fstemp/freesurfer/WMParcStatsLUT.txt
/usr/local/fstemp/freesurfer/VERSION
/usr/local/fstemp/freesurfer/build-stamp.txt
/usr/local/fstemp/freesurfer/trctrain
/usr/local/fstemp/freesurfer/lib
/usr/local/fstemp/freesurfer/FreeSurferEnv.csh
/usr/local/fstemp/freesurfer/AUTHORS
/usr/local/fstemp/freesurfer/matlab
/usr/local/fstemp/freesurfer/sessions


Perhaps your file was not yet complete, or it was corrupted in some way.
The md5sum of the tarball is 'd49e9dd61d6467f65b9582bddec653a4' which
you can get by typing:

   md5sum freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0.tar.gz

On 04/20/2017 08:04 AM, Ramesh Babu wrote:
> Dear Experts,
>
> I have installed in /usr/local/freesurfer. I am trying to follow the
> command given in the freesurfer web page.
>
> $> export FREESURFER_HOME=/usr/local/freesurfer $> source
> $FREESURFER_HOME/SetUpFreeSurfer.sh
>
> But I could not figure out the .sh file in the freesurfer folder. Please
> see the list of files in the freesurfer folder given below.
>
> List of files in the freesurfer folder;
>
> /usr/local/freesurfer/average
> /usr/local/freesurfer/fsafd
> /usr/local/freesurfer/fsfast
> /usr/local/freesurfer/lib
> /usr/local/freesurfer/sessions
> /usr/local/freesurfer/tktools
> /usr/local/freesurfer/trctrain
> /usr/local/freesurfer/DefectLUT.txt
> /usr/local/freesurfer/FreeSurferColorLUT.txt
> /usr/local/freesurfer/FreeSurferEnv.csh
> /usr/local/freesurfer/LICENSE
> /usr/local/freesurfer/SetUpFreeSurfer.csh
> /usr/local/freesurfer/sources.csh
> /usr/local/freesurfer/sources.sh
> /usr/local/freesurfer/tkmeditParcColorsCMA
> /usr/local/freesurfer/VERSION
> /usr/local/freesurfer/WMParcStatsLUT.txt
>
> You can notice that there is no SetUpFreeSurfer.sh file.
>
> Details about my pc;
>
>
> Ubuntu 16.04 LTS, 64 bit is installed. Running w8.1 via virtual box.
> Freesurfer is installed in Ubuntu OS.
>
>
> I am using bash shell.
>
> pc@RB:~$ echo $0
> bash
>
> pc@RB:~$ echo $SHELL
> /bin/bash
>
> pc@RB:~$ ps -p "$$"
>   PID TTY          TIME CMD
>  3706 pts/1    00:00:00 bash
>
> Need your help to run freesurfer in my pc.
>
>
> Thanks in advance
>
> Ramesh
>
>
>

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>
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