It did not look like there was an explicit error in that log file, it just stops at mris_volmask. Is that the right recon-all? Also, please just send the text file so that we don't have to unzip it.

On 1/22/2020 4:39 PM, Laurel Quinlan wrote:

External Email - Use Caution

Hi FS Support,

I have two brains for which recon-all exited with errors after I edited the wm.mgz volume. It seems that the problem occurs during the mri_segstats and mri_relabel_hypointensities steps (if I'm reading the output of the command "tail scripts/recon-all.log" correctly). I attached one of the recon-all.log files as a zipped txt file. Please let me know if you have troubleshooting suggestions.

Thank you for your help!

Laurel Quinlan

Research Specialist

Center for Healthy Minds

University of Wisconsin-Madison
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer