That will binarize all the labels, but you could then use that as a mask

On 07/21/2016 02:46 PM, Bruce Fischl wrote:
> yes, that should work also
> On Thu, 21 Jul 2016, Koubiyr, Ismail wrote:
>
>> I think you can use mri_binarize and set the match values as you like.
>> Hope it can help.
>>
>> Best,
>>
>> Ismail
>>
>>> On Jul 21, 2016, at 2:13 PM, Jinsong Tang <tangjinsonghn@gmail.com> wrote:
>>>
>>> Hello freesurfers,
>>>
>>> I want to select the subcortical structures (thalamus, pallidum, caudate, putamen, accumbens, hippocampus, and amygdala) and the 68 distinct brain regions as nodes of the individual brain networks. The labels are [9,11:13,17:18,26,48,50:54,58, 1002:1035, 2002:2035].  However, in the aparc+aseg.mgz files, there are also some other labels. Is there any way to delete all other unselected labels?
>>>
>>> Thank you so much!
>>> Best,
>>>
>>> Jinsong
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>>
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