Hi Katie

I think that should be ok, but of course the only way to know for sure is
to try!

cheers
Bruce

On Mon, 26 Nov 2018, Kathryn Fitzgerald wrote:

>
>         External Email - Use Caution        
>
> Dear FS experts,
>
> I was wondering if it is possible to run recon-all (e.g. autorecon2, autorecon3) on skull-stripped i
> mages which have gone through N4 correction.
>
> Would it be okay to run?
>
> recon-all -i sub1.nii.gz -subjid s1 -autorecon1 -sd . -noskullstrip
>
> I saw the work around for already skull-stripped images, but I wasn't sure if this would be appropri
> ate for images which have also been corrected by N4. Or is there another way I should approach this?
>
> Thank you for the help in advance!
>
> Kind regards,
> Katie
>
>_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer