Do you mean you want to create your own atlas? If so, then you need to create a whole-brain segmentation for each subject, then run mri_ca_train to create the atlas, then mri_ca_label to label a new subject
doug

On 2/21/14 4:54 AM, Saurabh Thakur wrote:

Hi Freesurfer expert,

Thanks for all your help,

I have explored the tkmedit ,tksurfer and freeview.

How to move ahead with segmentation task.

I looking forward to create my own .aseg file for sub cortical region.

Is it possible...?

And if possible,please share major breakpoint of the process.

Thanks in advance.

cheers
Saurabh Thakur,
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