Hey all,

I have a group of subjects with 2 time points that I've run thru the longitudinal processing stream. All goes OK until I run the recon-all -long and the resulting .long. subject dirs have the finalsurfs misaligned (i.e. one subject has the edits moved inferior and the other has them moved superior, causing drastic consequences to the pial/wm surfaces).

FYI these subjects were processed on a Linux-based high performance computing cluster and edits were made locally on a Linux virtual machine with subject dirs being transferred back and forth via scp. Not sure if this is relevant, but thought I’d mention it just in case.

I’ve uploaded a .tar file containing one of these longitudinal subject’s directories (i.e. both cross tps, base, and both resulting long tps) called ‘merkitch_upload_201980913.tar’ via the filedrop website.

Any help would be appreciated!

Thanks,

Doug

Douglas Merkitch
Clinical Research Coordinator

355 E. Erie St, Chicago, IL 60611
312-238-5911 office
dmerkitch@sralab.org

sralab.org

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