Hi Melly,

The LGI has the same format as the thickness files, so you can extract them using mris_anatomical_stats (providing you have your own annotation). The command will look something like:

mris_anatomical_stats -a $SUBJ/label/YOUR_ANNOT  -t $SUBJ/surf/?h.pial_lgi  -f $SUBJ/stats/OUTPUT_FILE  $SUBJ  ?h

Hope it helps,

Marie


On Jul 19, 2014, at 7:29 AM, melinda dora <mellydora@outlook.com> wrote:

Dear freesurfer group, is there a command to extract lobar gyrification values for each subject? If so please what are the steps? if Ive already created the lobar annotation labels, can I extract gyrifaction with these if I have already passed the gyrification command?

Best,

Melly
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