Hi Gallen, segmentHA_T1_long.sh is only available in the freesurfer dev version. Also, if you’re getting the glibc license error while using the martinos freesurfer distribution, I will message you directly to sort this out.

best,
Andrew


On Dec 22, 2017, at 3:11 PM, Gong, Liang <LGONG2@mgh.harvard.edu> wrote:

 
Hi,
I just completed a longitudinal stream preprocessing job using Freesurfer5.3, and I want to further analysis on hippocampal subfields. I see the manual in the following link: 
https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala .but I cant find the command of segmentHA_T1_long.sh. And then, I change my freesurfer to 6.0, this command also dont exist. 
I also try to using longHippoSubfieldsT1.sh to do my job, but there is an error when running: ERROR: Systems running GNU glibc version greater than 2.15 require a newly formatted license file.
PSI did my freesurfer job on martinos center, the path is /usr/local/freesurfer/stable6/bin/freesurfer
 
Thanks a lot.
 
Gallen
 
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