Sun Mar 8 16:31:03 CET 2020 /project/2419116.01/scripts /opt/freesurfer/6.0/bin/trac-all -prep -c /project/2419116.01/Freesurfer/001/tracula_out/tracula_config.txt Subject 001 SUBJECTS_DIR /project/2419116.01/Freesurfer/001 FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75855676 1531684 21849004 54133568 30491020 Swap: 52428796 33773148 18655648 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-15:31:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-15:31:05-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-15:31:05-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-15:31:05-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-15:31:05-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-15:31:06-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-15:31:06-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75852692 1495696 21848948 54172540 30494028 Swap: 52428796 33773148 18655648 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Image corrections Sun Mar 8 16:31:08 CET 2020 mri_convert --bvec-voxel /project/2419116.01/Data/001//data.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz mri_convert.bin --bvec-voxel /project/2419116.01/Data/001//data.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Data/001//data.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz... cp /project/2419116.01/Data/001//bvecs /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs cp /project/2419116.01/Data/001//bvals /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs.tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals.tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.625 mri_convert -oni 128 -onj 128 -onk 64 -oid -0.995933 -0.0884874 0.0169469 -ojd -0.0900097 0.969007 -0.23005 -okd -0.00393486 0.23064 0.973031 -oc 3.38246 -27.6582 0.765499 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz mri_convert.bin -oni 128 -onj 128 -onk 64 -oid -0.995933 -0.0884874 0.0169469 -ojd -0.0900097 0.969007 -0.23005 -okd -0.00393486 0.23064 0.973031 -oc 3.38246 -27.6582 0.765499 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz normalizing out_i_direction: (-0.995933, -0.0884874, 0.0169469) -> (-0.995933, -0.0884874, 0.0169469) normalizing out_j_direction: (-0.0900097, 0.969007, -0.23005) -> (-0.0900097, 0.969007, -0.23005) normalizing out_k_direction: (-0.00393486, 0.23064, 0.973031) -> (-0.00393486, 0.23064, 0.973031) $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz... INFO: found /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals, copying INFO: found /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs, converting to LAS mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.bvecs /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.bvals /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz ln -sf /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/data.nii.gz mri_convert --frame 0 1 2 3 4 5 6 /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz mri_convert.bin --frame 0 1 2 3 4 5 6 /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) keeping frames 0 1 2 3 4 5 6 writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz... mri_concat --i /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz --mean --o /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 7 Allocing output Done allocing nframes = 7 Computing mean across frames Writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz bet /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff #------------------------------------- #@# Image quality assessment Sun Mar 8 16:31:41 CET 2020 /opt/freesurfer/6.0/bin/dmri_motion --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --T 142.228485 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_motion --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --T 142.228485 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output motion measure file: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt Input DWI file: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz Input b-value table: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Low-b image intensity threshold: 142.228 Nominal diffusivity: 0.001 Loading DWI volume series from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz Loading b-value table from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Computing within-volume head motion measures Done in 4.251 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Sun Mar 8 16:31:45 CET 2020 mri_convert /project/2419116.01/Freesurfer/001/001/mri/brain.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brain.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brain.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz... orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz... tkregister2 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz --targ /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.dat tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl target volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.00000 0.00000 -0.00000 0.00000; 0.00000 0.00000 -1.00000 0.00000; -0.00000 1.00000 -0.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255 Log file is /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.log Sun Mar 8 16:31:49 CET 2020 setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts /opt/freesurfer/6.0/bin/bbregister --s 001 --init-fsl --dti --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --fslmat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/6.0 mri_convert /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii mri_convert.bin /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii... fslregister --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --niters 1 --maxangle 90 --tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat.fslregister.log Sun Mar 8 16:31:54 CET 2020 --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --niters 1 --maxangle 90 --tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.40 2016/02/12 21:43:15 zkaufman Exp $ mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /project/2419116.01/scripts mri_convert /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/refvol.fslregister.nii mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/refvol.fslregister.nii... -------------------------------------- /project/2419116.01/scripts mri_convert /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii --frame 0 mri_convert.bin /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) keeping frame 0 writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii... Mov determinant is -15.625 /project/2419116.01/scripts tkregister2_cmdl --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/reg0.345309.dat --regheader --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat.fsl.mat0 --s 001 --noedit tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/reg0.345309.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -15.625, ref det = -1 Sun Mar 8 16:31:59 CET 2020 /project/2419116.01/scripts flirt.fsl -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/refvol.fslregister.nii -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/6.0/bin/fsl.5.0.2.xyztrans.sch -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat.fsl.mat0 Sun Mar 8 16:32:13 CET 2020 /project/2419116.01/scripts flirt.fsl -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/refvol.fslregister.nii -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat.fsl.mat -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/6.0/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --fslreg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat.fsl.mat --noedit tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.99544 0.09540 -0.00060 -48.56150; -0.02093 0.21224 -0.97699 142.67500; -0.09307 0.97255 0.21327 -61.59010; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -15.625, ref det = -1 ---- Input registration matrix (computed) -------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Started at Sun Mar 8 16:31:54 CET 2020 Ended at Sun Mar 8 16:32:23 CET 2020 fslregister Done To check results, run: tkregister2 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --surf orig mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam movvol /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii regfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.init.dat subject 001 dof 6 outregfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1583686367 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.979601 1 -25.0 -25.0 25.0 1.064792 2 -25.0 25.0 -25.0 1.023617 3 -25.0 25.0 25.0 1.039445 4 25.0 -25.0 -25.0 1.052604 5 25.0 -25.0 25.0 1.025284 6 25.0 25.0 -25.0 0.988434 7 25.0 25.0 25.0 1.066169 REL: 8 0.718185 8.239945 1.029993 rel = 0.697271 Initial costs ---------------- Number of surface hits 2674 WM Intensity 412.2845 +/- 153.1570 Ctx Intensity 487.4983 +/- 214.4688 Pct Contrast 13.2012 +/- 37.5274 Cost 0.7182 RelCost 0.6973 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 1.0400 1.0400 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 1.0000 1.0000 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9301 0.9301 0.0 9 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 -4.0000 0.9293 0.9293 0.0 10 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.7988 0.7988 0.0 37 -4.0000 -4.0000 0.0000 0.0000 -4.0000 0.0000 0.7298 0.7298 0.0 280 0.0000 -4.0000 0.0000 0.0000 -4.0000 0.0000 0.7020 0.7020 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.3177 0.3177 0.0 Brute Force -------------------------- Min cost was 0.317730 Number of iterations 729 Search time 1.229000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.317730 7 -0.147 -4.000 0.000 0.000 0.000 0.000 0.3109168384 9 -0.165 -4.000 0.000 0.000 0.000 0.000 0.3108730396 10 -0.161 -4.000 0.000 0.000 0.000 0.000 0.3108462406 11 -0.157 -4.000 0.000 0.000 0.000 0.000 0.3108361629 12 -0.156 -4.000 0.000 0.000 0.000 0.000 0.3108361615 15 -0.156 -3.000 0.000 0.000 0.000 0.000 0.2747553450 20 -0.156 -3.135 0.000 0.000 0.000 0.000 0.2736968873 23 -0.156 -3.130 0.000 0.000 0.000 0.000 0.2736852405 25 -0.156 -3.129 0.000 0.000 0.000 0.000 0.2736836680 26 -0.156 -3.128 0.000 0.000 0.000 0.000 0.2736822452 28 -0.156 -3.128 1.000 0.000 0.000 0.000 0.2411502691 34 -0.156 -3.128 1.236 0.000 0.000 0.000 0.2410086978 35 -0.156 -3.128 1.131 0.000 0.000 0.000 0.2401234522 36 -0.156 -3.128 1.122 0.000 0.000 0.000 0.2401075765 39 -0.156 -3.128 1.121 0.000 0.000 0.000 0.2401073501 47 -0.156 -3.128 1.121 0.382 0.000 0.000 0.2251100830 48 -0.156 -3.128 1.121 0.394 0.000 0.000 0.2250570113 50 -0.156 -3.128 1.121 0.401 0.000 0.000 0.2250390930 51 -0.156 -3.128 1.121 0.402 0.000 0.000 0.2250388076 58 -0.156 -3.128 1.121 0.402 0.382 0.000 0.2176219625 59 -0.156 -3.128 1.121 0.402 0.293 0.000 0.2171584354 60 -0.156 -3.128 1.121 0.402 0.306 0.000 0.2167795108 61 -0.156 -3.128 1.121 0.402 0.331 0.000 0.2159457896 63 -0.156 -3.128 1.121 0.402 0.337 0.000 0.2158966699 73 -0.156 -3.128 1.121 0.402 0.337 -0.016 0.2158349380 76 -0.156 -3.128 1.121 0.402 0.337 -0.050 0.2157063079 78 -0.156 -3.128 1.121 0.402 0.337 -0.037 0.2157058181 79 -0.156 -3.128 1.121 0.402 0.337 -0.043 0.2156941215 powell nthiter 1: fret = 0.215694 95 -0.154 -3.128 1.121 0.402 0.337 -0.043 0.2156914255 102 -0.154 -3.746 1.121 0.402 0.337 -0.043 0.2147455923 104 -0.154 -3.447 1.121 0.402 0.337 -0.043 0.2051644161 106 -0.154 -3.530 1.121 0.402 0.337 -0.043 0.2038670439 108 -0.154 -3.529 1.121 0.402 0.337 -0.043 0.2038447022 110 -0.154 -3.515 1.121 0.402 0.337 -0.043 0.2038019614 111 -0.154 -3.521 1.121 0.402 0.337 -0.043 0.2037805596 118 -0.154 -3.521 0.503 0.402 0.337 -0.043 0.2007675429 120 -0.154 -3.521 0.734 0.402 0.337 -0.043 0.1969452605 122 -0.154 -3.521 0.731 0.402 0.337 -0.043 0.1969442132 123 -0.154 -3.521 0.729 0.402 0.337 -0.043 0.1969429868 128 -0.154 -3.521 0.728 0.402 0.337 -0.043 0.1969425190 135 -0.154 -3.521 0.728 0.784 0.337 -0.043 0.1897183275 138 -0.154 -3.521 0.728 0.874 0.337 -0.043 0.1892868810 141 -0.154 -3.521 0.728 0.887 0.337 -0.043 0.1892654651 142 -0.154 -3.521 0.728 0.884 0.337 -0.043 0.1892570950 143 -0.154 -3.521 0.728 0.882 0.337 -0.043 0.1892550911 151 -0.154 -3.521 0.728 0.882 0.335 -0.043 0.1892395502 152 -0.154 -3.521 0.728 0.882 0.294 -0.043 0.1882511019 158 -0.154 -3.521 0.728 0.882 0.299 -0.043 0.1881927905 172 -0.154 -3.521 0.728 0.882 0.299 -0.054 0.1881206478 powell nthiter 2: fret = 0.188121 182 -0.131 -3.521 0.728 0.882 0.299 -0.054 0.1880463504 184 -0.138 -3.521 0.728 0.882 0.299 -0.054 0.1880199911 186 -0.140 -3.521 0.728 0.882 0.299 -0.054 0.1880191062 194 -0.140 -3.749 0.728 0.882 0.299 -0.054 0.1852342411 195 -0.140 -3.734 0.728 0.882 0.299 -0.054 0.1850390578 197 -0.140 -3.729 0.728 0.882 0.299 -0.054 0.1849813466 198 -0.140 -3.712 0.728 0.882 0.299 -0.054 0.1848914570 200 -0.140 -3.714 0.728 0.882 0.299 -0.054 0.1848898401 209 -0.140 -3.714 0.596 0.882 0.299 -0.054 0.1848315819 210 -0.140 -3.714 0.655 0.882 0.299 -0.054 0.1841528300 211 -0.140 -3.714 0.661 0.882 0.299 -0.054 0.1841156359 213 -0.140 -3.714 0.669 0.882 0.299 -0.054 0.1840917614 223 -0.140 -3.714 0.669 0.884 0.299 -0.054 0.1840180532 224 -0.140 -3.714 0.669 0.901 0.299 -0.054 0.1836602716 226 -0.140 -3.714 0.669 0.902 0.299 -0.054 0.1836468508 235 -0.140 -3.714 0.669 0.902 0.314 -0.054 0.1834408531 236 -0.140 -3.714 0.669 0.902 0.350 -0.054 0.1830913683 239 -0.140 -3.714 0.669 0.902 0.351 -0.054 0.1830910734 247 -0.140 -3.714 0.669 0.902 0.351 0.059 0.1828978158 252 -0.140 -3.714 0.669 0.902 0.351 0.044 0.1828145614 255 -0.140 -3.714 0.669 0.902 0.351 0.041 0.1827968811 258 -0.140 -3.714 0.669 0.902 0.351 0.040 0.1827916547 powell nthiter 3: fret = 0.182792 267 -0.132 -3.714 0.669 0.902 0.351 0.040 0.1827584522 268 -0.118 -3.714 0.669 0.902 0.351 0.040 0.1827256861 271 -0.119 -3.714 0.669 0.902 0.351 0.040 0.1827255735 279 -0.119 -3.755 0.669 0.902 0.351 0.040 0.1827182325 280 -0.119 -3.736 0.669 0.902 0.351 0.040 0.1825840862 282 -0.119 -3.739 0.669 0.902 0.351 0.040 0.1825759714 293 -0.119 -3.739 0.571 0.902 0.351 0.040 0.1814756558 295 -0.119 -3.739 0.563 0.902 0.351 0.040 0.1813961901 296 -0.119 -3.739 0.542 0.902 0.351 0.040 0.1813407111 299 -0.119 -3.739 0.543 0.902 0.351 0.040 0.1813405946 310 -0.119 -3.739 0.543 0.906 0.351 0.040 0.1813330977 311 -0.119 -3.739 0.543 0.905 0.351 0.040 0.1813329617 321 -0.119 -3.739 0.543 0.905 0.352 0.040 0.1813311801 322 -0.119 -3.739 0.543 0.905 0.354 0.040 0.1813305576 333 -0.119 -3.739 0.543 0.905 0.354 0.036 0.1813273803 powell nthiter 4: fret = 0.181327 345 -0.145 -3.739 0.543 0.905 0.354 0.036 0.1810916244 347 -0.151 -3.739 0.543 0.905 0.354 0.036 0.1810788656 358 -0.151 -3.750 0.543 0.905 0.354 0.036 0.1810290797 360 -0.151 -3.749 0.543 0.905 0.354 0.036 0.1810286685 371 -0.151 -3.749 0.551 0.905 0.354 0.036 0.1810046038 372 -0.151 -3.749 0.554 0.905 0.354 0.036 0.1810009779 373 -0.151 -3.749 0.557 0.905 0.354 0.036 0.1809992338 386 -0.151 -3.749 0.557 0.911 0.354 0.036 0.1809600167 388 -0.151 -3.749 0.557 0.910 0.354 0.036 0.1809573754 399 -0.151 -3.749 0.557 0.910 0.348 0.036 0.1809332975 411 -0.151 -3.749 0.557 0.910 0.348 0.049 0.1809065771 412 -0.151 -3.749 0.557 0.910 0.348 0.045 0.1809021945 421 -0.163 -3.752 0.562 0.912 0.346 0.049 0.1808645511 422 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808642451 423 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808642008 426 -0.162 -3.752 0.562 0.912 0.346 0.048 0.1808641950 427 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808639642 powell nthiter 5: fret = 0.180864 441 -0.162 -3.752 0.562 0.912 0.346 0.047 0.1808635502 450 -0.162 -3.760 0.562 0.912 0.346 0.047 0.1808087628 451 -0.162 -3.764 0.562 0.912 0.346 0.047 0.1808047319 452 -0.162 -3.763 0.562 0.912 0.346 0.047 0.1808046958 461 -0.162 -3.763 0.560 0.912 0.346 0.047 0.1807954288 462 -0.162 -3.763 0.544 0.912 0.346 0.047 0.1807475015 464 -0.162 -3.763 0.546 0.912 0.346 0.047 0.1807452624 465 -0.162 -3.763 0.549 0.912 0.346 0.047 0.1807435887 478 -0.162 -3.763 0.549 0.917 0.346 0.047 0.1807133913 479 -0.162 -3.763 0.549 0.916 0.346 0.047 0.1807087687 480 -0.162 -3.763 0.549 0.915 0.346 0.047 0.1807051087 491 -0.162 -3.763 0.549 0.915 0.340 0.047 0.1806558301 492 -0.162 -3.763 0.549 0.915 0.339 0.047 0.1806550116 499 -0.174 -3.767 0.555 0.917 0.336 0.051 0.1806036106 504 -0.174 -3.767 0.555 0.917 0.336 0.051 0.1806036075 506 -0.197 -3.785 0.552 0.925 0.325 0.056 0.1804484577 513 -0.200 -3.787 0.552 0.926 0.323 0.057 0.1804451911 514 -0.201 -3.787 0.552 0.926 0.323 0.057 0.1804446728 517 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804446691 520 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804444539 521 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804444492 powell nthiter 6: fret = 0.180444 533 -0.201 -3.788 0.552 0.926 0.323 0.093 0.1804008376 534 -0.201 -3.788 0.552 0.926 0.323 0.078 0.1803661935 535 -0.201 -3.788 0.552 0.926 0.323 0.079 0.1803661169 543 -0.201 -3.801 0.552 0.926 0.323 0.079 0.1802962611 545 -0.201 -3.800 0.552 0.926 0.323 0.079 0.1802962201 551 -0.181 -3.794 0.543 0.923 0.326 0.073 0.1802897511 553 -0.191 -3.796 0.547 0.924 0.324 0.076 0.1802781763 554 -0.190 -3.796 0.547 0.924 0.324 0.076 0.1802781688 557 -0.189 -3.796 0.546 0.924 0.325 0.075 0.1802779359 560 -0.190 -3.796 0.547 0.924 0.325 0.076 0.1802776988 562 -0.189 -3.796 0.547 0.924 0.325 0.076 0.1802775938 563 -0.189 -3.796 0.547 0.924 0.325 0.076 0.1802773118 587 -0.189 -3.796 0.547 0.924 0.321 0.076 0.1802645678 589 -0.189 -3.796 0.547 0.924 0.319 0.076 0.1802626097 590 -0.189 -3.796 0.547 0.924 0.318 0.076 0.1802624062 593 -0.213 -3.814 0.544 0.932 0.306 0.081 0.1801486433 598 -0.217 -3.817 0.544 0.933 0.304 0.082 0.1801472000 powell nthiter 7: fret = 0.180147 615 -0.217 -3.817 0.544 0.933 0.304 0.085 0.1800995680 618 -0.217 -3.817 0.544 0.933 0.304 0.102 0.1799286454 620 -0.217 -3.817 0.544 0.933 0.304 0.106 0.1799135263 622 -0.217 -3.817 0.544 0.933 0.304 0.108 0.1799105046 623 -0.217 -3.817 0.544 0.933 0.304 0.109 0.1799104530 639 -0.211 -3.815 0.541 0.932 0.305 0.107 0.1799033968 640 -0.212 -3.816 0.542 0.932 0.305 0.107 0.1799027017 644 -0.212 -3.816 0.542 0.932 0.305 0.107 0.1799026394 658 -0.212 -3.816 0.542 0.925 0.305 0.107 0.1798667123 659 -0.212 -3.816 0.542 0.927 0.305 0.107 0.1798631920 668 -0.212 -3.816 0.542 0.927 0.302 0.107 0.1798570223 670 -0.212 -3.816 0.542 0.927 0.301 0.107 0.1798570206 677 -0.221 -3.822 0.541 0.930 0.297 0.109 0.1798299821 678 -0.220 -3.822 0.541 0.930 0.297 0.109 0.1798290986 679 -0.219 -3.821 0.541 0.929 0.298 0.109 0.1798273239 682 -0.219 -3.821 0.541 0.929 0.298 0.109 0.1798269987 powell nthiter 8: fret = 0.179827 697 -0.219 -3.821 0.541 0.929 0.298 0.112 0.1798266612 699 -0.219 -3.821 0.541 0.929 0.298 0.111 0.1798259710 706 -0.219 -3.819 0.541 0.929 0.298 0.111 0.1798101428 709 -0.219 -3.815 0.541 0.929 0.298 0.111 0.1797907963 718 -0.216 -3.814 0.540 0.929 0.298 0.110 0.1797861106 720 -0.215 -3.813 0.539 0.929 0.299 0.110 0.1797854987 723 -0.215 -3.813 0.539 0.929 0.299 0.110 0.1797854946 725 -0.214 -3.813 0.539 0.929 0.299 0.110 0.1797854619 726 -0.214 -3.813 0.539 0.929 0.299 0.110 0.1797852822 739 -0.214 -3.813 0.539 0.924 0.299 0.110 0.1797651670 758 -0.223 -3.820 0.538 0.927 0.294 0.112 0.1797433842 759 -0.222 -3.819 0.538 0.926 0.295 0.111 0.1797426966 762 -0.222 -3.819 0.538 0.926 0.295 0.111 0.1797426029 766 -0.226 -3.818 0.536 0.923 0.291 0.114 0.1796854483 769 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796078697 774 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796074948 780 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796074695 powell nthiter 9: fret = 0.179607 790 -0.232 -3.815 0.531 0.918 0.286 0.114 0.1795973934 799 -0.235 -3.817 0.531 0.919 0.284 0.115 0.1795863357 800 -0.236 -3.818 0.531 0.919 0.284 0.115 0.1795855418 814 -0.235 -3.818 0.530 0.919 0.284 0.115 0.1795840294 819 -0.235 -3.818 0.530 0.919 0.284 0.115 0.1795839802 830 -0.235 -3.818 0.530 0.926 0.284 0.115 0.1794771969 832 -0.235 -3.818 0.530 0.927 0.284 0.115 0.1794752390 843 -0.235 -3.818 0.530 0.927 0.283 0.115 0.1794737159 846 -0.239 -3.816 0.528 0.924 0.280 0.117 0.1794179234 849 -0.241 -3.815 0.526 0.922 0.278 0.119 0.1794132380 851 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794130525 856 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794129969 858 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794129383 861 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794128305 powell nthiter 10: fret = 0.179413 872 -0.240 -3.815 0.526 0.923 0.278 0.115 0.1794071401 896 -0.239 -3.815 0.526 0.923 0.278 0.115 0.1794064570 901 -0.239 -3.815 0.526 0.923 0.278 0.115 0.1794063888 912 -0.239 -3.815 0.526 0.925 0.278 0.115 0.1793870218 913 -0.239 -3.815 0.526 0.926 0.278 0.115 0.1793834371 924 -0.239 -3.815 0.526 0.926 0.279 0.115 0.1793820738 927 -0.243 -3.813 0.523 0.923 0.276 0.117 0.1793695776 931 -0.242 -3.814 0.524 0.924 0.277 0.116 0.1793685150 932 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793681508 933 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793680899 935 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793677663 940 -0.244 -3.812 0.522 0.925 0.276 0.115 0.1793437051 945 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793398172 947 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793395766 953 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793395602 powell nthiter 11: fret = 0.179340 976 -0.246 -3.813 0.520 0.926 0.274 0.115 0.1793368355 977 -0.247 -3.813 0.520 0.926 0.274 0.115 0.1793367208 980 -0.247 -3.813 0.520 0.926 0.274 0.115 0.1793363658 989 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793326470 990 -0.245 -3.812 0.519 0.926 0.274 0.114 0.1793325115 991 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793324952 992 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793324733 994 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793323323 995 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793323060 1002 -0.245 -3.812 0.519 0.925 0.274 0.114 0.1793316234 1019 -0.245 -3.812 0.519 0.925 0.275 0.114 0.1793306092 1027 -0.245 -3.812 0.518 0.926 0.275 0.114 0.1793302638 1035 -0.245 -3.812 0.518 0.926 0.275 0.114 0.1793302247 Powell done niters = 11 Computing relative cost 0 -25.0 -25.0 -25.0 1.035876 1 -25.0 -25.0 25.0 1.005432 2 -25.0 25.0 -25.0 0.994174 3 -25.0 25.0 25.0 1.033495 4 25.0 -25.0 -25.0 1.022629 5 25.0 -25.0 25.0 1.042502 6 25.0 25.0 -25.0 1.039259 7 25.0 25.0 25.0 0.996001 REL: 8 0.179330 8.169368 1.021171 rel = 0.175612 Number of iterations 11 Min cost was 0.179330 Number of FunctionCalls 1036 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.748000 sec Parameters at optimum (transmm) -0.24505 -3.81180 0.51850 Parameters at optimum (rotdeg) 0.92559 0.27477 0.11420 Final costs ---------------- Number of surface hits 2673 WM Intensity 321.0697 +/- 87.9017 Ctx Intensity 450.2344 +/- 126.9143 Pct Contrast 31.5471 +/- 28.6048 Cost 0.1793 RelCost 0.6973 Reg at min cost was 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat, type = 14 Original Reg 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00045 0.00510 0.00085 0.38053; -0.00044 -0.01586 0.00360 3.18996; 0.00478 -0.00314 -0.01585 -0.10706; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 3.383639 Computing change in rh position Surface-RMS-Diff-mm 3.302913 0.547229 4.302054 mri_segreg done mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam movvol /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/template.nii regfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.345255/bbr.pass1.dat subject 001 dof 6 outregfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1584484774 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.007960 1 -25.0 -25.0 25.0 1.011953 2 -25.0 25.0 -25.0 1.009494 3 -25.0 25.0 25.0 1.027691 4 25.0 -25.0 -25.0 1.023954 5 25.0 -25.0 25.0 1.030451 6 25.0 25.0 -25.0 1.023579 7 25.0 25.0 25.0 1.042015 REL: 8 0.191128 8.177096 1.022137 rel = 0.186988 Initial costs ---------------- Number of surface hits 267581 WM Intensity 320.9112 +/- 89.2211 Ctx Intensity 450.5283 +/- 127.3895 Pct Contrast 31.8042 +/- 28.0143 Cost 0.1911 RelCost 0.1870 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1912 0.1912 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1911 0.1911 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1892 0.1892 0.0 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.1865 0.1865 0.0 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1852 0.1852 0.0 19 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0000 0.1851 0.1851 0.0 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1836 0.1836 0.0 73 -0.1000 -0.1000 0.1000 0.1000 -0.1000 0.0000 0.1835 0.1835 0.0 118 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0000 0.1833 0.1833 0.0 261 0.0000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1832 0.1832 0.0 264 0.0000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1816 0.1816 0.0 267 0.0000 -0.1000 -0.1000 0.1000 0.1000 -0.1000 0.1798 0.1798 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1793 0.1793 0.0 Brute Force -------------------------- Min cost was 0.179330 Number of iterations 729 Search time 1.202000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.191128 7 0.173 0.000 0.000 0.000 0.000 0.000 0.1886514903 16 0.173 0.071 0.000 0.000 0.000 0.000 0.1882374668 18 0.173 0.066 0.000 0.000 0.000 0.000 0.1882277018 20 0.173 0.056 0.000 0.000 0.000 0.000 0.1882225638 31 0.173 0.056 -0.030 0.000 0.000 0.000 0.1881545961 33 0.173 0.056 -0.035 0.000 0.000 0.000 0.1881530728 35 0.173 0.056 -0.036 0.000 0.000 0.000 0.1881530598 44 0.173 0.056 -0.036 0.054 0.000 0.000 0.1881276209 45 0.173 0.056 -0.036 0.030 0.000 0.000 0.1880834796 46 0.173 0.056 -0.036 0.029 0.000 0.000 0.1880833573 54 0.173 0.056 -0.036 0.029 0.045 0.000 0.1877354351 56 0.173 0.056 -0.036 0.029 0.047 0.000 0.1877348212 57 0.173 0.056 -0.036 0.029 0.048 0.000 0.1877347659 65 0.173 0.056 -0.036 0.029 0.048 -0.112 0.1870888226 66 0.173 0.056 -0.036 0.029 0.048 -0.105 0.1870691076 67 0.173 0.056 -0.036 0.029 0.048 -0.092 0.1870392112 70 0.173 0.056 -0.036 0.029 0.048 -0.089 0.1870372263 71 0.173 0.056 -0.036 0.029 0.048 -0.088 0.1870369856 powell nthiter 1: fret = 0.187037 82 0.172 0.056 -0.036 0.029 0.048 -0.088 0.1870368908 90 0.172 0.052 -0.036 0.029 0.048 -0.088 0.1870344850 99 0.172 0.052 -0.037 0.029 0.048 -0.088 0.1870343496 100 0.172 0.052 -0.038 0.029 0.048 -0.088 0.1870342890 102 0.172 0.052 -0.039 0.029 0.048 -0.088 0.1870342842 103 0.172 0.052 -0.040 0.029 0.048 -0.088 0.1870275806 116 0.172 0.052 -0.040 0.061 0.048 -0.088 0.1870159803 117 0.172 0.052 -0.040 0.047 0.048 -0.088 0.1869907265 126 0.172 0.052 -0.040 0.047 0.071 -0.088 0.1868993274 127 0.172 0.052 -0.040 0.047 0.078 -0.088 0.1868986579 128 0.172 0.052 -0.040 0.047 0.075 -0.088 0.1868984994 137 0.172 0.052 -0.040 0.047 0.076 -0.135 0.1868847482 138 0.172 0.052 -0.040 0.047 0.076 -0.114 0.1868528894 139 0.172 0.052 -0.040 0.047 0.076 -0.113 0.1868522283 141 0.172 0.052 -0.040 0.047 0.076 -0.110 0.1868514123 144 0.171 0.048 -0.044 0.066 0.104 -0.131 0.1867935937 151 0.171 0.047 -0.045 0.068 0.108 -0.134 0.1867932783 152 0.171 0.048 -0.045 0.067 0.107 -0.133 0.1867931273 158 0.171 0.048 -0.045 0.067 0.107 -0.133 0.1867931121 powell nthiter 2: fret = 0.186793 166 0.216 0.048 -0.045 0.067 0.106 -0.133 0.1867091783 167 0.206 0.048 -0.045 0.067 0.106 -0.133 0.1867048592 168 0.208 0.048 -0.045 0.067 0.106 -0.133 0.1867048430 176 0.208 0.031 -0.045 0.067 0.106 -0.133 0.1866684198 177 0.208 0.024 -0.045 0.067 0.106 -0.133 0.1866680036 178 0.208 0.027 -0.045 0.067 0.106 -0.133 0.1866674808 179 0.208 0.026 -0.045 0.067 0.106 -0.133 0.1866674677 187 0.208 0.026 -0.047 0.067 0.106 -0.133 0.1866644753 188 0.208 0.026 -0.062 0.067 0.106 -0.133 0.1866525584 190 0.208 0.026 -0.069 0.067 0.106 -0.133 0.1866519888 191 0.208 0.026 -0.066 0.067 0.106 -0.133 0.1866519141 192 0.208 0.026 -0.065 0.067 0.106 -0.133 0.1866519039 200 0.208 0.026 -0.065 0.086 0.106 -0.133 0.1866421668 203 0.208 0.026 -0.065 0.085 0.106 -0.133 0.1866419812 212 0.208 0.026 -0.065 0.085 0.106 -0.121 0.1866216573 216 0.208 0.026 -0.065 0.085 0.106 -0.114 0.1866134320 217 0.208 0.026 -0.065 0.085 0.106 -0.112 0.1866128490 219 0.208 0.026 -0.065 0.085 0.106 -0.111 0.1866126587 221 0.207 0.022 -0.069 0.103 0.135 -0.133 0.1866009989 225 0.207 0.023 -0.068 0.096 0.124 -0.125 0.1865902882 227 0.207 0.023 -0.068 0.097 0.125 -0.126 0.1865899166 231 0.207 0.023 -0.068 0.097 0.126 -0.126 0.1865898864 powell nthiter 3: fret = 0.186590 244 0.208 0.023 -0.068 0.097 0.126 -0.126 0.1865896994 262 0.208 0.023 -0.089 0.097 0.126 -0.126 0.1865673183 265 0.208 0.023 -0.087 0.097 0.126 -0.126 0.1865669864 266 0.208 0.023 -0.086 0.097 0.126 -0.126 0.1865668858 268 0.208 0.023 -0.084 0.097 0.126 -0.126 0.1865667004 276 0.208 0.023 -0.084 0.093 0.126 -0.126 0.1865633299 278 0.208 0.023 -0.084 0.092 0.126 -0.126 0.1865630426 287 0.208 0.023 -0.084 0.092 0.126 -0.114 0.1865480564 290 0.208 0.023 -0.084 0.092 0.126 -0.113 0.1865479825 298 0.208 0.023 -0.085 0.094 0.129 -0.116 0.1865462250 299 0.208 0.023 -0.085 0.094 0.129 -0.116 0.1865462008 300 0.208 0.023 -0.085 0.094 0.130 -0.116 0.1865461887 301 0.208 0.023 -0.085 0.094 0.130 -0.116 0.1865461738 304 0.208 0.022 -0.085 0.095 0.130 -0.117 0.1865461735 305 0.208 0.023 -0.085 0.094 0.130 -0.117 0.1865461482 306 0.208 0.023 -0.085 0.094 0.130 -0.117 0.1865461069 307 0.208 0.023 -0.085 0.095 0.130 -0.117 0.1865461006 powell nthiter 4: fret = 0.186546 318 0.215 0.023 -0.085 0.095 0.130 -0.117 0.1865421494 319 0.216 0.023 -0.085 0.095 0.130 -0.117 0.1865420444 339 0.216 0.023 -0.089 0.095 0.130 -0.117 0.1865412955 348 0.216 0.023 -0.089 0.093 0.130 -0.117 0.1865405547 350 0.216 0.023 -0.089 0.092 0.130 -0.117 0.1865402844 359 0.216 0.023 -0.089 0.092 0.130 -0.113 0.1865392983 367 0.216 0.021 -0.090 0.099 0.141 -0.122 0.1865376231 371 0.216 0.021 -0.090 0.098 0.139 -0.120 0.1865350774 372 0.216 0.021 -0.090 0.098 0.139 -0.120 0.1865347226 373 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865335918 378 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865335251 379 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865334420 380 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865334288 381 0.223 0.020 -0.094 0.100 0.146 -0.122 0.1865326238 powell nthiter 5: fret = 0.186533 389 0.218 0.021 -0.090 0.097 0.138 -0.119 0.1865323743 401 0.218 0.022 -0.090 0.097 0.138 -0.119 0.1865322488 411 0.218 0.022 -0.095 0.097 0.138 -0.119 0.1865268393 416 0.218 0.022 -0.094 0.097 0.138 -0.119 0.1865263886 424 0.218 0.022 -0.094 0.095 0.138 -0.119 0.1865256887 434 0.218 0.022 -0.094 0.095 0.138 -0.115 0.1865254509 435 0.218 0.022 -0.094 0.095 0.138 -0.117 0.1865249666 443 0.218 0.022 -0.094 0.094 0.137 -0.116 0.1865249137 445 0.218 0.022 -0.094 0.094 0.137 -0.116 0.1865248935 powell nthiter 6: fret = 0.186525 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.009414 1 -25.0 -25.0 25.0 1.011922 2 -25.0 25.0 -25.0 1.007060 3 -25.0 25.0 25.0 1.028050 4 25.0 -25.0 -25.0 1.025711 5 25.0 -25.0 25.0 1.030716 6 25.0 25.0 -25.0 1.022463 7 25.0 25.0 25.0 1.040151 REL: 8 0.186525 8.175486 1.021936 rel = 0.182521 Number of iterations 6 Min cost was 0.186525 Number of FunctionCalls 512 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 48.982000 sec Parameters at optimum (transmm) 0.21825 0.02242 -0.09360 Parameters at optimum (rotdeg) 0.09440 0.13759 -0.11652 Final costs ---------------- Number of surface hits 267577 WM Intensity 320.8239 +/- 89.1866 Ctx Intensity 451.6115 +/- 127.2807 Pct Contrast 32.1302 +/- 27.5993 Cost 0.1865 RelCost 0.1870 Reg at min cost was 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00021 0.00186 -0.00253 -0.06898; 0.00218 -0.00142 0.00034 -0.08288; 0.00239 -0.00017 -0.00166 0.14333; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.233227 Computing change in rh position Surface-RMS-Diff-mm 0.238095 0.038914 0.331692 mri_segreg done MinCost: 0.186525 320.823876 451.611458 32.130236 tkregister2_cmdl --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; float2int = 0 --------------------------------------- INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -15.625, ref det = -1 Cleaning up Started at Sun Mar 8 16:31:49 CET 2020 Ended at Sun Mar 8 16:33:38 CET 2020 BBR-Run-Time-Sec 109 bbregister Done To check results, run: tkregisterfv --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --surfs convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anat.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Sun Mar 8 16:33:38 CET 2020 flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_mni.nii.gz -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2anat.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2mni.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2anatorig.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Sun Mar 8 16:40:59 CET 2020 mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 481098 values in range Counting number of voxels in first frame Found 481098 voxels in final mask Count: 481098 481098.000000 16777216 2.867568 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 507046 values in range Counting number of voxels in first frame Found 507046 voxels in final mask Count: 507046 507046.000000 16777216 3.022230 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 59593 values in range Counting number of voxels in first frame Found 59593 voxels in final mask Count: 59593 59593.000000 16777216 0.355202 mri_binarize done mri_aparc2aseg --s 001 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /project/2419116.01/Freesurfer/001 subject 001 outvol /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /project/2419116.01/Freesurfer/001/001/surf/lh.white Reading lh pial surface /project/2419116.01/Freesurfer/001/001/surf/lh.pial Loading lh annotations from /project/2419116.01/Freesurfer/001/001/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /project/2419116.01/Freesurfer/001/001/surf/rh.white Reading rh pial surface /project/2419116.01/Freesurfer/001/001/surf/rh.pial Loading rh annotations from /project/2419116.01/Freesurfer/001/001/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/2419116.01/Freesurfer/001/001/mri/ribbon.mgz Loading filled from /project/2419116.01/Freesurfer/001/001/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/2419116.01/Freesurfer/001/001/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838887 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 5 clusters 0 k 1.000000 1 k 891.000000 2 k 1.000000 3 k 7.000000 4 k 1.000000 Fixing Parahip RH WM Found 2 clusters 0 k 1.000000 1 k 975.000000 Writing output aseg to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 384626 values in range Counting number of voxels in first frame Found 384626 voxels in final mask Count: 384626 384626.000000 16777216 2.292550 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 672012 values in range Counting number of voxels in first frame Found 672012 voxels in final mask Count: 672012 672012.000000 16777216 4.005504 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 18452 values in range Counting number of voxels in first frame Found 18452 voxels in final mask Count: 18452 18452.000000 16777216 0.109982 mri_binarize done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz -add /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz -mul /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/White-Matter.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/notventricles.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz -k /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_snr.txt flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lowb_brain_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lowb_brain_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Sun Mar 8 16:46:30 CET 2020 dtifit -k /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz -m /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs -b /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals -o /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit 0 128 0 128 0 64 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L1.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L2.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L3.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_MD.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_MO.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_S0.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Sun Mar 8 16:46:43 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.001.344772.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.001.344772.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.344772.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 1700 streamlines for straying off mask INFO: Rejected 49 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 6666 total streamlines (min/mean/max length: 59/95/131) Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4266 non-truncated streamlines (min/mean/max length: 59/96/131) INFO: Center of mass of start points: (98+/-3, 98+/-6, 42+/-9) INFO: Center of mass of midpoints: (112+/-2, 110+/-4, 79+/-5) INFO: Center of mass of end points: (112+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34695 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0303498 INFO: Points where local peeks in curvature occur are 100 104 54 (curv = 0.0660258) 108 110 67 (curv = 0.0408704) 110 110 71 (curv = 0.0407246) 112 111 78 (curv = 0.0378013) 113 110 83 (curv = 0.0306361) 113 110 91 (curv = 0.0307648) 115 109 104 (curv = 0.040742) 114 108 110 (curv = 0.0457882) 113 104 119 (curv = 0.0415046) 111 104 126 (curv = 0.0416192) INFO: Intermediate dominant points are 100 99 36 100 104 54 108 110 67 114 108 110 111 104 126 113 104 142 INFO: Final dominant points are 100 99 36 100 104 54 108 110 67 114 108 110 111 104 126 113 104 142 INFO: Selected control points are 100 99 36 100 105 55 109 110 68 115 108 108 111 104 125 113 104 142 INFO: Distances between consecutive points are 20 17 40 18 17 INFO: Selected control points in test subject's space are 67 86 17 67 85 24 71 85 29 73 79 41 72 75 46 73 72 51 INFO: Distances between consecutive points in test subject's space are 7 6 14 6 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 51.725 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1798 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 7439 total streamlines (min/mean/max length: 46/96/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4864 non-truncated streamlines (min/mean/max length: 53/96/132) INFO: Center of mass of start points: (81+/-3, 97+/-6, 42+/-12) INFO: Center of mass of midpoints: (67+/-3, 110+/-4, 80+/-7) INFO: Center of mass of end points: (68+/-7, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 41518 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.032375 INFO: Points where local peeks in curvature occur are 78 100 59 (curv = 0.046936) 72 108 69 (curv = 0.0645512) 63 109 103 (curv = 0.0604903) 65 104 116 (curv = 0.0698425) 66 104 128 (curv = 0.049079) INFO: Intermediate dominant points are 81 93 31 78 98 55 72 108 69 64 109 99 65 104 116 63 109 143 INFO: Final dominant points are 81 93 31 78 100 59 72 108 69 63 109 105 65 104 116 63 109 143 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 93 31 79 98 54 68 109 74 64 109 97 65 104 118 63 109 143 INFO: Distances between consecutive points are 24 25 23 22 26 INFO: Selected control points in test subject's space are 59 85 15 58 83 23 54 84 31 53 80 38 53 75 44 53 73 53 INFO: Distances between consecutive points in test subject's space are 8 9 8 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0341551 INFO: Points where local peeks in curvature occur are 74 107 66 (curv = 0.0576489) 68 109 73 (curv = 0.0557511) 63 109 103 (curv = 0.0546378) 65 104 116 (curv = 0.0736261) 66 103 130 (curv = 0.0714191) INFO: Intermediate dominant points are 81 93 31 78 99 55 74 107 66 63 109 101 65 104 116 61 108 142 INFO: Final dominant points are 81 93 31 78 99 55 74 107 66 63 108 106 65 104 116 61 108 142 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 93 31 78 98 54 67 109 75 63 109 99 65 104 119 61 108 142 INFO: Distances between consecutive points are 24 26 24 21 24 INFO: Selected control points in test subject's space are 59 85 15 58 83 23 54 84 31 52 80 39 53 75 44 52 73 52 INFO: Distances between consecutive points in test subject's space are 8 9 9 7 8 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0326069 INFO: Points where local peeks in curvature occur are 73 109 67 (curv = 0.0363797) 68 110 76 (curv = 0.0539409) 67 110 85 (curv = 0.0352519) 67 111 92 (curv = 0.0340746) 67 110 110 (curv = 0.0536851) 67 103 123 (curv = 0.0971425) INFO: Intermediate dominant points are 83 95 38 77 103 58 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Final dominant points are 83 95 38 74 108 65 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Selected control points are 83 95 38 75 107 65 68 110 76 67 110 108 67 103 122 70 110 138 INFO: Distances between consecutive points are 31 13 32 16 18 INFO: Selected control points in test subject's space are 60 85 17 57 84 28 54 84 32 54 79 42 54 74 45 56 74 51 INFO: Distances between consecutive points in test subject's space are 11 5 11 6 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 63.067 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 31 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3512 total streamlines (min/mean/max length: 53/91/143) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1305 non-truncated streamlines (min/mean/max length: 53/97/143) INFO: Center of mass of start points: (133+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 70+/-13) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38779 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 81 99 23 80 90 26 81 82 24 78 74 23 71 64 19 INFO: Distances between consecutive points in test subject's space are 10 8 9 13 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 20.403 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 56 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2084 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 938 non-truncated streamlines (min/mean/max length: 57/100/126) INFO: Center of mass of start points: (46+/-8, 141+/-6, 42+/-10) INFO: Center of mass of midpoints: (47+/-3, 106+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 46+/-11, 72+/-10) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 27475 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 46 101 27 46 92 26 44 81 25 50 71 24 57 61 20 INFO: Distances between consecutive points in test subject's space are 9 11 12 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 46 101 27 46 92 26 44 81 25 50 70 24 57 61 20 INFO: Distances between consecutive points in test subject's space are 9 11 13 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 45 101 27 45 92 26 45 82 25 50 71 24 57 61 21 INFO: Distances between consecutive points in test subject's space are 9 10 12 13 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 45 101 27 45 92 25 45 82 25 49 72 24 57 62 21 INFO: Distances between consecutive points in test subject's space are 9 10 11 13 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 43 100 29 46 89 26 46 78 25 49 72 24 52 64 21 INFO: Distances between consecutive points in test subject's space are 12 11 7 9 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 8.994 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 229 streamlines for straying off mask INFO: Rejected 27 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5038 total streamlines (min/mean/max length: 8/57/103) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3169 non-truncated streamlines (min/mean/max length: 8/55/100) INFO: Center of mass of start points: (127+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-3, 126+/-3, 54+/-3) INFO: Center of mass of end points: (113+/-10, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22380 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 77 102 26 78 93 27 73 98 33 70 101 34 69 106 35 INFO: Distances between consecutive points in test subject's space are 9 9 4 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 24.144 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 317 streamlines for straying off mask INFO: Rejected 110 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6494 total streamlines (min/mean/max length: 8/62/106) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4515 non-truncated streamlines (min/mean/max length: 8/62/106) INFO: Center of mass of start points: (54+/-6, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 161+/-17, 57+/-4) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23821 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0760508 INFO: Points where local peeks in curvature occur are 53 137 42 (curv = 0.0895057) 51 133 44 (curv = 0.0894911) 53 126 56 (curv = 0.131711) 66 141 59 (curv = 0.0984792) 72 163 58 (curv = 0.105343) INFO: Intermediate dominant points are 57 147 43 53 126 56 66 141 59 72 163 58 71 174 60 INFO: Final dominant points are 57 147 43 53 126 56 66 141 59 72 163 58 71 174 60 WARN: Defaulting to equidistant control points INFO: Selected control points are 57 147 43 51 129 48 59 137 61 70 155 61 71 174 60 INFO: Distances between consecutive points are 20 17 21 19 INFO: Selected control points in test subject's space are 49 101 28 47 94 26 50 95 32 55 101 34 55 108 37 INFO: Distances between consecutive points in test subject's space are 8 7 8 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0622043 INFO: Points where local peeks in curvature occur are 56 129 51 (curv = 0.122374) 59 133 58 (curv = 0.0797927) 67 143 60 (curv = 0.0668038) INFO: Intermediate dominant points are 52 148 39 56 129 51 67 143 60 71 155 62 74 172 61 INFO: Final dominant points are 52 148 39 56 129 51 67 143 60 72 162 61 74 172 61 INFO: Selected control points are 52 148 39 56 129 50 67 143 62 72 161 60 74 172 61 INFO: Distances between consecutive points are 22 21 19 11 INFO: Selected control points in test subject's space are 47 102 26 49 94 27 54 97 33 55 104 35 56 107 37 INFO: Distances between consecutive points in test subject's space are 8 8 7 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 34.861 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2469 streamlines for straying off mask INFO: Rejected 233 streamlines for reversing direction INFO: Rejected 123 streamlines as length outliers INFO: Have 6950 total streamlines (min/mean/max length: 87/134/166) Processing pathway 7 of 18... Matching streamline ends INFO: Have 5076 non-truncated streamlines (min/mean/max length: 87/136/168) INFO: Center of mass of start points: (102+/-7, 38+/-8, 98+/-16) INFO: Center of mass of midpoints: (90+/-3, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 98+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 61291 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 63 76 31 54 70 29 54 61 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 12 11 10 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 28 65 76 31 55 71 30 52 63 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 8 9 11 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0489878 INFO: Points where local peeks in curvature occur are 107 44 86 (curv = 0.105289) 116 54 86 (curv = 0.0947602) 101 87 85 (curv = 0.0532037) 91 91 84 (curv = 0.0912266) 84 90 85 (curv = 0.0582558) 61 59 86 (curv = 0.103901) 64 52 86 (curv = 0.076793) INFO: Intermediate dominant points are 99 38 108 107 44 86 111 72 86 91 91 84 66 74 87 61 59 86 72 38 112 INFO: Final dominant points are 99 38 108 107 44 86 104 84 86 91 91 84 65 72 87 61 59 86 72 38 112 INFO: Selected control points are 99 38 108 111 46 87 108 82 87 89 91 84 65 74 88 63 56 83 72 38 112 INFO: Distances between consecutive points are 25 36 21 30 19 35 INFO: Selected control points in test subject's space are 67 55 30 72 61 24 70 73 30 63 76 31 53 70 29 52 64 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 10 14 8 12 7 12 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 64.145 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 2027 streamlines for straying off mask INFO: Rejected 264 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 25293 total streamlines (min/mean/max length: 51/89/114) Processing pathway 8 of 18... Matching streamline ends INFO: Have 20888 non-truncated streamlines (min/mean/max length: 52/90/117) INFO: Center of mass of start points: (103+/-5, 187+/-6, 76+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 187+/-6, 77+/-11) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 58019 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0521372 INFO: Points where local peeks in curvature occur are 108 166 74 (curv = 0.0525738) 103 155 76 (curv = 0.06521) 92 149 77 (curv = 0.0986181) 82 151 75 (curv = 0.0545684) 76 156 73 (curv = 0.0612074) 73 177 70 (curv = 0.0817821) INFO: Intermediate dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Final dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Selected control points are 106 186 79 109 167 73 89 148 77 71 175 70 75 190 76 INFO: Distances between consecutive points are 20 28 33 17 INFO: Selected control points in test subject's space are 69 109 45 70 104 40 63 97 38 55 107 41 57 111 45 INFO: Distances between consecutive points in test subject's space are 7 10 13 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 350.124 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 452 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 13078 total streamlines (min/mean/max length: 30/60/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 5099 non-truncated streamlines (min/mean/max length: 37/68/91) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-3, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 41097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0477613 INFO: Points where local peeks in curvature occur are 114 163 73 (curv = 0.161472) 110 152 75 (curv = 0.0666645) 109 144 80 (curv = 0.0846067) INFO: Intermediate dominant points are 108 184 74 114 163 73 109 144 80 103 131 79 95 113 81 INFO: Final dominant points are 108 184 74 114 163 73 109 144 80 98 122 79 95 113 81 INFO: Selected control points are 108 184 74 112 162 74 109 144 79 99 123 79 95 113 81 INFO: Distances between consecutive points are 22 19 23 11 INFO: Selected control points in test subject's space are 70 110 43 72 102 40 71 95 38 67 88 35 65 84 34 INFO: Distances between consecutive points in test subject's space are 9 7 9 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 132.124 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Processing pathway 10 of 18... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0390412 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0682111) 67 158 77 (curv = 0.0483775) 67 142 82 (curv = 0.103237) INFO: Intermediate dominant points are 70 186 87 65 168 78 67 142 82 72 133 80 81 116 74 INFO: Final dominant points are 70 186 87 65 168 78 67 142 82 77 125 77 81 116 74 INFO: Selected control points are 70 186 87 66 167 76 68 142 81 76 126 78 81 116 74 INFO: Distances between consecutive points are 22 26 18 12 INFO: Selected control points in test subject's space are 55 108 48 53 103 41 54 94 39 57 89 35 59 86 32 INFO: Distances between consecutive points in test subject's space are 9 9 7 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 75.143 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 127 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5150 total streamlines (min/mean/max length: 25/67/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1383 non-truncated streamlines (min/mean/max length: 55/85/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 125+/-2, 105+/-2) INFO: Center of mass of end points: (98+/-4, 162+/-7, 85+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19286 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 68 69 32 66 77 40 66 86 44 66 92 45 66 102 41 INFO: Distances between consecutive points in test subject's space are 11 10 6 11 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 24.398 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 146 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 48 streamlines as length outliers INFO: Have 4227 total streamlines (min/mean/max length: 30/65/109) Processing pathway 12 of 18... Matching streamline ends INFO: Have 898 non-truncated streamlines (min/mean/max length: 56/81/110) INFO: Center of mass of start points: (81+/-4, 81+/-7, 99+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (82+/-4, 159+/-5, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 17568 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 79 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0212268 INFO: Points where local peeks in curvature occur are 79 89 103 (curv = 0.055751) 81 106 106 (curv = 0.0250421) 83 115 106 (curv = 0.0261669) 83 125 106 (curv = 0.0480091) 82 132 104 (curv = 0.0286656) INFO: Intermediate dominant points are 80 79 99 80 100 105 83 125 106 82 141 100 86 160 92 INFO: Final dominant points are 80 79 99 83 114 106 83 125 106 82 150 96 86 160 92 INFO: Selected control points are 80 79 99 82 113 107 83 126 106 82 149 96 86 160 92 INFO: Distances between consecutive points are 35 13 25 12 INFO: Selected control points in test subject's space are 59 70 34 60 80 42 60 85 44 60 94 44 61 98 45 INFO: Distances between consecutive points in test subject's space are 13 5 9 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 12.343 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 789 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3409 total streamlines (min/mean/max length: 2/43/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1071 non-truncated streamlines (min/mean/max length: 17/51/89) INFO: Center of mass of start points: (110+/-6, 83+/-13, 74+/-12) INFO: Center of mass of midpoints: (112+/-2, 99+/-5, 57+/-5) INFO: Center of mass of end points: (116+/-4, 121+/-14, 42+/-12) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 15655 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0243762 INFO: Points where local peeks in curvature occur are 116 113 45 (curv = 0.0532996) INFO: Intermediate dominant points are 105 80 76 110 97 60 116 113 45 116 132 33 INFO: Final dominant points are 105 80 76 113 104 53 116 113 45 116 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 80 76 110 97 60 116 114 44 116 132 33 INFO: Distances between consecutive points are 24 24 21 INFO: Selected control points in test subject's space are 69 74 27 71 82 24 73 90 22 73 98 22 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.02502 INFO: Points where local peeks in curvature occur are 108 90 67 (curv = 0.0360269) 114 110 47 (curv = 0.0408157) 116 118 42 (curv = 0.0600972) INFO: Intermediate dominant points are 108 80 75 111 99 60 116 118 42 117 130 33 INFO: Final dominant points are 108 80 75 113 109 49 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 80 75 110 98 61 114 113 45 117 130 33 INFO: Distances between consecutive points are 23 22 21 INFO: Selected control points in test subject's space are 70 74 26 71 82 25 72 90 22 73 97 21 INFO: Distances between consecutive points in test subject's space are 8 9 7 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0427659 INFO: Points where local peeks in curvature occur are 116 106 46 (curv = 0.0649199) 119 119 44 (curv = 0.0858006) INFO: Intermediate dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 INFO: Final dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 82 76 111 96 58 119 115 44 114 127 32 INFO: Distances between consecutive points are 24 25 18 INFO: Selected control points in test subject's space are 69 74 27 71 82 24 74 91 22 72 97 21 INFO: Distances between consecutive points in test subject's space are 9 10 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0483925 INFO: Points where local peeks in curvature occur are 116 110 45 (curv = 0.0855854) 120 118 45 (curv = 0.124355) INFO: Intermediate dominant points are 105 86 76 112 96 58 120 118 45 116 131 36 INFO: Final dominant points are 105 86 76 116 108 46 120 118 45 116 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 86 76 112 96 58 118 113 45 116 131 36 INFO: Distances between consecutive points are 22 22 20 INFO: Selected control points in test subject's space are 69 76 28 72 82 24 74 90 22 73 97 22 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0240422 INFO: Points where local peeks in curvature occur are 112 106 50 (curv = 0.0269974) 115 116 44 (curv = 0.0463711) INFO: Intermediate dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 INFO: Final dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 81 72 112 98 58 115 115 44 116 133 38 INFO: Distances between consecutive points are 22 22 19 INFO: Selected control points in test subject's space are 72 75 25 72 83 24 73 91 22 73 98 23 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275015 INFO: Points where local peeks in curvature occur are 113 108 48 (curv = 0.0358726) 115 116 43 (curv = 0.0680362) INFO: Intermediate dominant points are 112 81 72 112 98 58 115 116 43 116 133 38 INFO: Final dominant points are 112 81 72 113 107 49 115 116 43 116 133 38 INFO: Selected control points are 112 81 72 111 105 50 112 113 43 116 133 38 INFO: Distances between consecutive points are 33 11 21 INFO: Selected control points in test subject's space are 72 75 25 71 86 23 71 90 22 73 98 23 INFO: Distances between consecutive points in test subject's space are 11 4 8 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 8.63 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 2371 streamlines for straying off mask INFO: Rejected 47 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1818 total streamlines (min/mean/max length: 5/39/87) Processing pathway 14 of 18... Matching streamline ends INFO: Have 386 non-truncated streamlines (min/mean/max length: 26/52/87) INFO: Center of mass of start points: (69+/-5, 83+/-5, 76+/-7) INFO: Center of mass of midpoints: (66+/-1, 101+/-2, 57+/-2) INFO: Center of mass of end points: (61+/-3, 127+/-8, 38+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 10310 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0274293 INFO: Points where local peeks in curvature occur are 63 113 44 (curv = 0.0943638) INFO: Intermediate dominant points are 72 86 78 66 97 61 63 113 44 58 127 40 INFO: Final dominant points are 72 86 78 64 107 51 63 113 44 58 127 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 86 78 66 96 62 63 110 47 58 127 40 INFO: Distances between consecutive points are 20 21 19 INFO: Selected control points in test subject's space are 56 75 28 53 81 25 52 88 23 50 95 23 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0296438 INFO: Points where local peeks in curvature occur are 68 98 59 (curv = 0.0405308) 58 114 45 (curv = 0.0463594) 56 123 43 (curv = 0.0708832) INFO: Intermediate dominant points are 74 80 82 69 96 62 56 123 43 63 140 34 INFO: Final dominant points are 74 80 82 60 111 47 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 74 80 82 69 96 62 57 117 45 63 140 34 INFO: Distances between consecutive points are 26 30 26 INFO: Selected control points in test subject's space are 57 73 29 54 81 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 11 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0338948 INFO: Points where local peeks in curvature occur are 59 112 46 (curv = 0.0736338) 56 124 43 (curv = 0.07522) INFO: Intermediate dominant points are 73 85 77 66 101 56 56 124 43 63 140 34 INFO: Final dominant points are 73 85 77 58 114 45 56 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 85 77 66 101 57 57 118 44 63 140 34 INFO: Distances between consecutive points are 27 23 25 INFO: Selected control points in test subject's space are 56 75 28 53 84 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 8 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0335029 INFO: Points where local peeks in curvature occur are 67 99 58 (curv = 0.0404608) 59 114 45 (curv = 0.0620015) 56 124 43 (curv = 0.0669754) INFO: Intermediate dominant points are 73 84 80 67 99 58 56 124 43 63 140 34 INFO: Final dominant points are 73 84 80 67 99 58 56 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 84 80 67 99 58 57 118 44 63 140 34 INFO: Distances between consecutive points are 27 26 25 INFO: Selected control points in test subject's space are 56 74 29 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 9 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0296151 INFO: Points where local peeks in curvature occur are 63 116 43 (curv = 0.0951984) INFO: Intermediate dominant points are 75 88 81 66 98 61 63 116 43 58 128 38 INFO: Final dominant points are 75 88 81 64 107 51 63 116 43 58 128 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 88 81 67 97 62 64 112 46 58 128 38 INFO: Distances between consecutive points are 22 22 19 INFO: Selected control points in test subject's space are 57 76 30 54 81 25 52 89 23 50 96 23 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.035845 INFO: Points where local peeks in curvature occur are 59 114 45 (curv = 0.0607087) 56 123 43 (curv = 0.0789122) INFO: Intermediate dominant points are 73 86 74 66 101 56 56 123 43 63 140 34 INFO: Final dominant points are 73 86 74 59 114 45 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 86 74 67 100 57 57 118 44 63 140 34 INFO: Distances between consecutive points are 23 24 25 INFO: Selected control points in test subject's space are 56 76 27 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0321422 INFO: Points where local peeks in curvature occur are 58 113 46 (curv = 0.0491887) 56 118 44 (curv = 0.0716443) 56 127 42 (curv = 0.0622645) INFO: Intermediate dominant points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Final dominant points are 73 81 80 61 108 49 56 118 44 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Distances between consecutive points are 26 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.037928 INFO: Points where local peeks in curvature occur are 60 112 46 (curv = 0.0533407) 57 118 44 (curv = 0.0661796) 58 130 41 (curv = 0.064075) INFO: Intermediate dominant points are 71 89 73 63 104 53 57 118 44 63 139 34 INFO: Final dominant points are 71 89 73 61 109 48 57 118 44 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 89 73 64 103 54 57 120 44 63 139 34 INFO: Distances between consecutive points are 25 21 22 INFO: Selected control points in test subject's space are 55 77 27 52 85 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0317425 INFO: Points where local peeks in curvature occur are 69 96 61 (curv = 0.0335399) 58 113 46 (curv = 0.0525133) 56 119 44 (curv = 0.0364098) 55 125 43 (curv = 0.0654384) INFO: Intermediate dominant points are 73 81 80 69 96 61 55 125 43 63 140 34 INFO: Final dominant points are 73 81 80 69 96 61 55 125 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 45 63 140 34 INFO: Distances between consecutive points are 26 29 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0315581 INFO: Points where local peeks in curvature occur are 57 115 44 (curv = 0.0570667) 55 123 43 (curv = 0.0712494) INFO: Intermediate dominant points are 75 80 83 68 98 59 55 123 43 63 140 34 INFO: Final dominant points are 75 80 83 58 112 46 55 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 80 83 69 98 60 56 117 44 63 140 34 INFO: Distances between consecutive points are 30 28 26 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0351498 INFO: Points where local peeks in curvature occur are 62 107 49 (curv = 0.0363106) 60 112 46 (curv = 0.0452798) 58 115 44 (curv = 0.0406186) 56 123 43 (curv = 0.0718994) INFO: Intermediate dominant points are 73 88 75 66 102 55 56 123 43 63 139 34 INFO: Final dominant points are 73 88 75 59 113 45 56 123 43 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 88 75 66 102 55 56 120 43 63 139 34 INFO: Distances between consecutive points are 25 24 22 INFO: Selected control points in test subject's space are 56 76 28 53 84 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.030819 INFO: Points where local peeks in curvature occur are 59 113 46 (curv = 0.0431522) 56 122 43 (curv = 0.0682253) INFO: Intermediate dominant points are 75 88 78 66 101 56 56 122 43 63 140 34 INFO: Final dominant points are 75 88 78 59 112 46 56 122 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 88 78 66 100 57 56 120 44 63 140 34 INFO: Distances between consecutive points are 26 26 23 INFO: Selected control points in test subject's space are 57 76 29 53 83 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 10 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0324296 INFO: Points where local peeks in curvature occur are 60 111 46 (curv = 0.0564556) 56 123 43 (curv = 0.0730714) INFO: Intermediate dominant points are 73 86 74 67 100 57 56 123 43 63 139 34 INFO: Final dominant points are 73 86 74 59 112 46 56 123 43 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 86 74 67 100 58 57 118 44 63 139 34 INFO: Distances between consecutive points are 22 25 24 INFO: Selected control points in test subject's space are 56 76 27 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0304242 INFO: Points where local peeks in curvature occur are 67 101 55 (curv = 0.0310752) 58 113 44 (curv = 0.0615476) 56 126 41 (curv = 0.065121) INFO: Intermediate dominant points are 76 82 84 69 98 60 56 126 41 63 140 34 INFO: Final dominant points are 76 82 84 58 114 44 56 126 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 69 98 60 57 118 43 63 140 34 INFO: Distances between consecutive points are 30 29 25 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0318825 INFO: Points where local peeks in curvature occur are 69 98 59 (curv = 0.03237) 58 112 45 (curv = 0.0654878) 55 123 43 (curv = 0.0768589) INFO: Intermediate dominant points are 75 80 83 69 98 59 55 123 43 63 140 34 INFO: Final dominant points are 75 80 83 58 112 45 55 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 80 83 69 98 59 56 117 44 63 140 34 INFO: Distances between consecutive points are 31 27 26 INFO: Selected control points in test subject's space are 57 73 29 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 11 10 9 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0316268 INFO: Points where local peeks in curvature occur are 58 113 44 (curv = 0.0617648) 56 118 43 (curv = 0.050822) 56 127 41 (curv = 0.0642236) INFO: Intermediate dominant points are 76 82 84 69 97 61 56 127 41 63 139 34 INFO: Final dominant points are 76 82 84 57 116 44 56 127 41 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 70 97 62 57 116 44 63 139 34 INFO: Distances between consecutive points are 27 29 26 INFO: Selected control points in test subject's space are 57 73 29 55 81 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 12 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0344389 INFO: Points where local peeks in curvature occur are 60 113 47 (curv = 0.0587094) 57 120 45 (curv = 0.0637146) 57 127 43 (curv = 0.0563828) INFO: Intermediate dominant points are 69 88 73 63 103 55 57 120 45 63 140 34 INFO: Final dominant points are 69 88 73 60 111 48 57 120 45 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 88 73 63 102 56 57 120 45 63 140 34 INFO: Distances between consecutive points are 23 22 24 INFO: Selected control points in test subject's space are 55 77 27 52 84 24 49 92 24 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0327995 INFO: Points where local peeks in curvature occur are 69 97 60 (curv = 0.0376939) 58 113 46 (curv = 0.0510837) 55 124 43 (curv = 0.0631597) 56 129 42 (curv = 0.0494332) INFO: Intermediate dominant points are 73 81 80 69 97 60 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 69 97 60 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 45 63 140 34 INFO: Distances between consecutive points are 26 29 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 64 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313604 INFO: Points where local peeks in curvature occur are 58 113 46 (curv = 0.0505024) 56 119 44 (curv = 0.0515978) 56 128 42 (curv = 0.0567789) INFO: Intermediate dominant points are 73 81 80 68 98 59 56 128 42 63 140 34 INFO: Final dominant points are 73 81 80 57 117 45 56 128 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 68 98 59 56 119 44 63 140 34 INFO: Distances between consecutive points are 27 28 24 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315404 INFO: Points where local peeks in curvature occur are 67 100 56 (curv = 0.0343215) 57 115 44 (curv = 0.0628178) 55 124 42 (curv = 0.0790405) INFO: Intermediate dominant points are 76 82 84 69 97 61 55 124 42 63 139 34 INFO: Final dominant points are 76 82 84 58 113 45 55 124 42 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 69 97 61 56 117 44 63 139 34 INFO: Distances between consecutive points are 28 29 25 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0331918 INFO: Points where local peeks in curvature occur are 70 96 61 (curv = 0.0504604) 56 117 45 (curv = 0.0420456) 55 124 43 (curv = 0.0663317) INFO: Intermediate dominant points are 73 81 80 70 96 61 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 70 96 61 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Distances between consecutive points are 26 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313862 INFO: Points where local peeks in curvature occur are 69 96 61 (curv = 0.0415083) 58 114 46 (curv = 0.0469165) 55 124 43 (curv = 0.0730865) INFO: Intermediate dominant points are 73 81 80 69 96 61 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 69 96 61 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 61 57 117 45 63 140 34 INFO: Distances between consecutive points are 25 28 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0361745 INFO: Points where local peeks in curvature occur are 59 114 45 (curv = 0.0497179) 56 123 43 (curv = 0.087933) INFO: Intermediate dominant points are 71 89 72 63 104 53 56 123 43 63 140 34 INFO: Final dominant points are 71 89 72 59 114 45 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 89 72 63 104 53 56 121 44 63 140 34 INFO: Distances between consecutive points are 25 20 23 INFO: Selected control points in test subject's space are 55 77 27 52 85 23 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0318213 INFO: Points where local peeks in curvature occur are 56 119 44 (curv = 0.048675) 56 125 42 (curv = 0.0539669) INFO: Intermediate dominant points are 75 87 75 66 101 56 56 125 42 63 140 34 INFO: Final dominant points are 75 87 75 57 115 45 56 125 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 87 75 67 100 57 56 119 44 63 140 34 INFO: Distances between consecutive points are 24 26 24 INFO: Selected control points in test subject's space are 57 76 27 54 83 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0337472 INFO: Points where local peeks in curvature occur are 70 96 61 (curv = 0.0378976) 57 113 45 (curv = 0.0504477) 55 119 44 (curv = 0.0519547) 55 127 42 (curv = 0.0546405) INFO: Intermediate dominant points are 73 81 79 70 96 61 55 127 42 63 140 34 INFO: Final dominant points are 73 81 79 70 96 61 55 127 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 55 118 44 63 140 34 INFO: Distances between consecutive points are 27 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0338422 INFO: Points where local peeks in curvature occur are 67 100 55 (curv = 0.033996) 57 112 45 (curv = 0.0479258) 55 119 44 (curv = 0.0659095) 55 127 41 (curv = 0.0619004) INFO: Intermediate dominant points are 73 81 79 69 98 59 55 119 44 63 140 34 INFO: Final dominant points are 73 81 79 61 107 49 55 119 44 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 55 119 44 63 140 34 INFO: Distances between consecutive points are 27 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0331925 INFO: Points where local peeks in curvature occur are 69 99 58 (curv = 0.0503239) 57 114 44 (curv = 0.0650247) 55 125 42 (curv = 0.0702716) INFO: Intermediate dominant points are 76 81 82 69 98 59 55 125 42 63 140 34 INFO: Final dominant points are 76 81 82 57 114 44 55 125 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 81 82 70 97 60 56 116 44 63 140 34 INFO: Distances between consecutive points are 28 29 27 INFO: Selected control points in test subject's space are 57 73 29 55 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0354402 INFO: Points where local peeks in curvature occur are 58 113 47 (curv = 0.054599) 56 119 45 (curv = 0.0498879) 56 128 42 (curv = 0.0637215) INFO: Intermediate dominant points are 70 88 72 58 113 47 56 128 42 63 140 34 INFO: Final dominant points are 70 88 72 58 113 47 56 128 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 88 72 62 103 54 56 121 44 63 140 34 INFO: Distances between consecutive points are 25 21 23 INFO: Selected control points in test subject's space are 55 77 27 51 85 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 7 9 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0346843 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0456736) 62 104 51 (curv = 0.0408854) 57 114 45 (curv = 0.048472) 55 127 41 (curv = 0.0632786) INFO: Intermediate dominant points are 73 81 79 69 98 58 55 127 41 63 140 34 INFO: Final dominant points are 73 81 79 56 115 44 55 127 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 56 116 44 63 140 34 INFO: Distances between consecutive points are 27 27 27 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0322995 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0494916) 61 106 50 (curv = 0.0343319) 57 114 45 (curv = 0.0446841) 55 119 44 (curv = 0.0541963) 55 128 41 (curv = 0.0659957) INFO: Intermediate dominant points are 73 80 79 68 99 57 56 117 44 63 140 34 INFO: Final dominant points are 73 80 79 68 99 57 55 128 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 80 79 69 97 60 56 115 45 63 140 34 INFO: Distances between consecutive points are 26 27 28 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 90 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 9 10 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0457205 INFO: Points where local peeks in curvature occur are 62 108 47 (curv = 0.0460582) 57 115 41 (curv = 0.0998232) INFO: Intermediate dominant points are 63 85 69 64 101 56 57 115 41 61 132 34 INFO: Final dominant points are 63 85 69 62 107 48 57 115 41 61 132 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 85 69 64 101 57 57 114 41 61 132 34 INFO: Distances between consecutive points are 20 22 20 INFO: Selected control points in test subject's space are 52 76 25 52 84 24 49 90 21 51 98 22 INFO: Distances between consecutive points in test subject's space are 8 7 8 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0347437 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0400344) 57 113 45 (curv = 0.0481061) 55 117 44 (curv = 0.078974) 55 127 41 (curv = 0.0626145) INFO: Intermediate dominant points are 73 81 79 69 98 58 55 117 44 63 140 34 INFO: Final dominant points are 73 81 79 61 106 50 55 117 44 63 140 34 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 97 59 55 116 44 63 140 34 INFO: Distances between consecutive points are 26 28 27 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0419896 INFO: Points where local peeks in curvature occur are 57 117 41 (curv = 0.0986815) INFO: Intermediate dominant points are 63 85 69 64 101 56 57 117 41 61 132 34 INFO: Final dominant points are 63 85 69 62 108 48 57 117 41 61 132 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 85 69 64 101 56 57 117 41 61 132 34 INFO: Distances between consecutive points are 21 23 17 INFO: Selected control points in test subject's space are 52 76 25 52 84 24 49 91 22 51 98 22 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0337172 INFO: Points where local peeks in curvature occur are 69 91 67 (curv = 0.0475023) 64 106 53 (curv = 0.03459) 63 111 44 (curv = 0.0725888) INFO: Intermediate dominant points are 69 84 75 69 91 67 63 111 44 61 119 40 INFO: Final dominant points are 69 84 75 69 91 67 63 111 44 61 119 40 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 69 84 75 67 96 63 64 108 50 61 119 40 INFO: Distances between consecutive points are 17 18 15 INFO: Selected control points in test subject's space are 55 75 27 54 81 25 52 87 23 51 92 22 INFO: Distances between consecutive points in test subject's space are 6 7 5 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0438157 INFO: Points where local peeks in curvature occur are 62 114 45 (curv = 0.0883861) 59 127 43 (curv = 0.124035) INFO: Intermediate dominant points are 62 84 68 64 101 57 62 114 45 58 133 35 INFO: Final dominant points are 62 84 68 63 105 54 62 114 45 58 133 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 64 100 58 62 118 44 58 133 35 INFO: Distances between consecutive points are 19 23 18 INFO: Selected control points in test subject's space are 52 76 25 52 83 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0367799 INFO: Points where local peeks in curvature occur are 62 115 44 (curv = 0.0943394) INFO: Intermediate dominant points are 61 84 68 65 100 59 62 115 44 58 132 38 INFO: Final dominant points are 61 84 68 63 107 52 62 115 44 58 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 65 100 59 62 115 44 58 132 38 INFO: Distances between consecutive points are 19 21 18 INFO: Selected control points in test subject's space are 51 76 25 53 83 25 51 90 22 50 97 23 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0432847 INFO: Points where local peeks in curvature occur are 62 109 48 (curv = 0.0695036) 61 115 45 (curv = 0.066256) 59 125 45 (curv = 0.0725883) INFO: Intermediate dominant points are 61 84 68 62 109 48 59 125 45 58 135 35 INFO: Final dominant points are 61 84 68 62 109 48 59 125 45 58 135 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 64 102 56 60 118 45 58 135 35 INFO: Distances between consecutive points are 22 20 20 INFO: Selected control points in test subject's space are 51 76 25 52 84 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 8 7 7 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0435702 INFO: Points where local peeks in curvature occur are 62 109 48 (curv = 0.0695036) 61 115 45 (curv = 0.0650396) INFO: Intermediate dominant points are 61 84 68 62 109 48 60 120 45 58 134 35 INFO: Final dominant points are 61 84 68 62 109 48 58 128 44 58 134 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 64 102 56 60 118 45 58 134 35 INFO: Distances between consecutive points are 22 20 19 INFO: Selected control points in test subject's space are 51 76 25 52 84 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 8 7 7 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0343432 INFO: Points where local peeks in curvature occur are 65 92 66 (curv = 0.0778395) 63 115 44 (curv = 0.0824412) INFO: Intermediate dominant points are 61 84 68 65 99 59 63 115 44 58 127 39 INFO: Final dominant points are 61 84 68 64 108 51 63 115 44 58 127 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 65 99 59 63 113 45 58 127 39 INFO: Distances between consecutive points are 18 20 16 INFO: Selected control points in test subject's space are 51 76 25 53 83 24 52 89 22 50 95 23 INFO: Distances between consecutive points in test subject's space are 7 6 6 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0375003 INFO: Points where local peeks in curvature occur are 65 92 65 (curv = 0.0501599) 65 97 62 (curv = 0.0460349) 63 115 44 (curv = 0.0660475) INFO: Intermediate dominant points are 62 84 68 65 99 60 63 115 44 59 130 39 INFO: Final dominant points are 62 84 68 63 108 51 63 115 44 59 130 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 99 61 63 112 46 59 130 39 INFO: Distances between consecutive points are 17 20 20 INFO: Selected control points in test subject's space are 52 76 25 53 82 25 52 89 23 50 96 23 INFO: Distances between consecutive points in test subject's space are 6 7 7 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0367409 INFO: Points where local peeks in curvature occur are 63 114 45 (curv = 0.0901783) INFO: Intermediate dominant points are 62 84 68 65 101 58 63 114 45 59 131 39 INFO: Final dominant points are 62 84 68 63 107 53 63 114 45 59 131 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 100 59 63 113 46 59 131 39 INFO: Distances between consecutive points are 19 18 20 INFO: Selected control points in test subject's space are 52 76 25 53 83 25 52 89 23 50 96 24 INFO: Distances between consecutive points in test subject's space are 7 6 7 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 41 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0337365 INFO: Points where local peeks in curvature occur are 64 107 53 (curv = 0.0413051) 64 111 45 (curv = 0.0644957) INFO: Intermediate dominant points are 67 84 73 66 97 62 64 111 45 61 119 40 INFO: Final dominant points are 67 84 73 64 107 52 64 111 45 61 119 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 84 73 66 96 63 64 108 51 61 119 40 INFO: Distances between consecutive points are 16 17 16 INFO: Selected control points in test subject's space are 54 75 26 53 81 25 52 87 23 51 92 22 INFO: Distances between consecutive points in test subject's space are 6 6 5 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0346344 INFO: Points where local peeks in curvature occur are 63 116 45 (curv = 0.0676922) INFO: Intermediate dominant points are 62 84 68 65 101 59 63 116 45 59 132 38 INFO: Final dominant points are 62 84 68 63 108 52 63 116 45 59 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 101 59 63 116 45 59 132 38 INFO: Distances between consecutive points are 19 21 18 INFO: Selected control points in test subject's space are 52 76 25 53 83 25 52 90 23 50 97 23 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0379823 INFO: Points where local peeks in curvature occur are 65 93 65 (curv = 0.0819611) 63 115 45 (curv = 0.0943796) INFO: Intermediate dominant points are 62 84 68 65 100 59 63 115 45 59 132 38 INFO: Final dominant points are 62 84 68 63 107 53 63 115 45 59 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 99 60 63 114 45 59 132 38 INFO: Distances between consecutive points are 17 21 20 INFO: Selected control points in test subject's space are 52 76 25 53 82 25 52 90 23 50 97 23 INFO: Distances between consecutive points in test subject's space are 6 8 7 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0299391 INFO: Points where local peeks in curvature occur are 64 104 56 (curv = 0.0664447) INFO: Intermediate dominant points are 76 80 77 70 94 66 64 104 56 61 119 40 INFO: Final dominant points are 76 80 77 68 97 62 64 104 56 61 119 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 80 77 70 94 66 64 107 52 61 119 40 INFO: Distances between consecutive points are 19 20 17 INFO: Selected control points in test subject's space are 57 73 27 55 80 26 52 86 24 51 92 22 INFO: Distances between consecutive points in test subject's space are 7 7 6 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0285059 INFO: Points where local peeks in curvature occur are 67 88 69 (curv = 0.0819413) 65 100 60 (curv = 0.0291358) 65 106 53 (curv = 0.0539817) INFO: Intermediate dominant points are 70 86 75 67 94 65 65 106 53 60 117 44 INFO: Final dominant points are 70 86 75 65 100 60 65 106 53 60 117 44 INFO: Selected control points are 70 86 75 64 98 59 63 104 52 60 117 44 INFO: Distances between consecutive points are 21 9 16 INFO: Selected control points in test subject's space are 55 76 27 52 82 24 52 85 23 51 91 23 INFO: Distances between consecutive points in test subject's space are 7 3 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 7.007 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 895 streamlines for straying off mask INFO: Rejected 614 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8728 total streamlines (min/mean/max length: 20/58/101) Processing pathway 15 of 18... Matching streamline ends INFO: Have 4068 non-truncated streamlines (min/mean/max length: 26/64/103) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 103+/-4) INFO: Center of mass of end points: (141+/-9, 84+/-10, 111+/-11) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 44230 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 87 88 42 79 83 39 79 75 38 79 72 36 88 71 39 INFO: Distances between consecutive points in test subject's space are 10 8 4 10 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 53.016 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 3250 streamlines for straying off mask INFO: Rejected 157 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 12170 total streamlines (min/mean/max length: 18/62/99) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6307 non-truncated streamlines (min/mean/max length: 27/69/98) INFO: Center of mass of start points: (34+/-7, 130+/-5, 99+/-11) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 80+/-10, 113+/-11) INFO: Split streamlines into 16 segments Computing path histograms INFO: Total streamline volume is 51117 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0635991 INFO: Points where local peeks in curvature occur are 52 114 101 (curv = 0.122291) 51 106 104 (curv = 0.0802017) 54 94 105 (curv = 0.0743668) 53 86 103 (curv = 0.198502) INFO: Intermediate dominant points are 28 135 97 52 114 101 52 104 104 53 86 103 34 77 116 INFO: Final dominant points are 28 135 97 52 114 101 54 95 105 53 86 103 34 77 116 WARN: Defaulting to equidistant control points INFO: Selected control points are 28 135 97 45 122 99 51 106 104 53 88 103 34 77 116 INFO: Distances between consecutive points are 21 18 18 26 INFO: Selected control points in test subject's space are 38 89 43 45 84 41 48 78 40 48 72 37 41 66 39 INFO: Distances between consecutive points in test subject's space are 9 7 7 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0605977 INFO: Points where local peeks in curvature occur are 40 123 95 (curv = 0.0756807) 51 118 101 (curv = 0.0874053) 54 111 103 (curv = 0.077998) 53 97 106 (curv = 0.0608137) 52 79 102 (curv = 0.133891) INFO: Intermediate dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Final dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Selected control points are 31 131 96 51 117 100 54 98 106 52 79 102 42 73 114 INFO: Distances between consecutive points are 25 20 20 17 INFO: Selected control points in test subject's space are 39 88 42 48 82 40 49 75 39 48 69 35 44 65 38 INFO: Distances between consecutive points in test subject's space are 11 7 7 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 105.11 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 1054 streamlines for straying off mask INFO: Rejected 41 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 6773 total streamlines (min/mean/max length: 34/89/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4633 non-truncated streamlines (min/mean/max length: 40/91/136) INFO: Center of mass of start points: (144+/-7, 132+/-5, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 41575 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0428344 INFO: Points where local peeks in curvature occur are 129 117 99 (curv = 0.11744) 125 98 102 (curv = 0.04563) 123 87 99 (curv = 0.0805228) INFO: Intermediate dominant points are 147 135 90 129 117 99 123 87 99 129 80 85 142 87 63 INFO: Final dominant points are 147 135 90 129 117 99 123 87 99 135 81 74 142 87 63 WARN: Defaulting to equidistant control points INFO: Selected control points are 147 135 90 130 118 98 125 98 102 127 81 88 142 87 63 INFO: Distances between consecutive points are 25 21 22 30 INFO: Selected control points in test subject's space are 86 91 40 79 84 40 77 76 38 78 72 30 84 78 24 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0456772 INFO: Points where local peeks in curvature occur are 136 126 96 (curv = 0.067624) 129 118 98 (curv = 0.0877839) 128 102 101 (curv = 0.0507271) 126 84 96 (curv = 0.100583) INFO: Intermediate dominant points are 144 136 102 129 118 98 126 84 96 129 82 81 146 84 63 INFO: Final dominant points are 144 136 102 129 118 98 126 84 96 135 80 71 146 84 63 INFO: Selected control points are 144 136 102 130 117 99 126 86 97 134 81 71 146 84 63 INFO: Distances between consecutive points are 24 31 28 15 INFO: Selected control points in test subject's space are 85 89 44 79 83 40 78 73 34 81 75 25 85 77 23 INFO: Distances between consecutive points in test subject's space are 9 12 10 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 42.28 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 635 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2476 total streamlines (min/mean/max length: 31/88/129) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1528 non-truncated streamlines (min/mean/max length: 55/91/131) INFO: Center of mass of start points: (40+/-9, 134+/-8, 97+/-14) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 104+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 26700 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 44 92 39 49 84 40 50 75 38 47 72 30 38 75 25 INFO: Distances between consecutive points in test subject's space are 9 9 9 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498729 INFO: Points where local peeks in curvature occur are 53 119 100 (curv = 0.0848449) 54 100 104 (curv = 0.0786155) 53 82 92 (curv = 0.0664417) 47 80 79 (curv = 0.058139) INFO: Intermediate dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 INFO: Final dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 95 53 116 100 55 94 102 48 80 82 27 90 71 INFO: Distances between consecutive points are 24 22 25 26 INFO: Selected control points in test subject's space are 40 87 41 48 82 40 49 74 37 46 72 29 38 77 27 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0525215 INFO: Points where local peeks in curvature occur are 50 121 99 (curv = 0.0879324) 54 99 104 (curv = 0.0865024) 53 82 92 (curv = 0.0741171) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 INFO: Final dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 94 102 48 80 83 28 90 70 INFO: Distances between consecutive points are 23 21 24 26 INFO: Selected control points in test subject's space are 41 87 40 48 82 40 49 74 37 46 72 29 38 78 27 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0569891 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.0825601) 52 115 102 (curv = 0.0819523) 56 95 104 (curv = 0.0771318) 55 89 102 (curv = 0.0667286) 53 82 95 (curv = 0.0895094) INFO: Intermediate dominant points are 33 129 101 51 118 101 53 82 95 50 82 84 34 77 77 INFO: Final dominant points are 33 129 101 51 118 101 53 82 95 43 83 73 34 77 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 50 82 85 34 77 77 INFO: Distances between consecutive points are 25 22 21 19 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 73 37 47 73 30 41 72 27 INFO: Distances between consecutive points in test subject's space are 10 9 8 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 73 37 48 72 29 40 72 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 41 87 40 48 82 40 49 74 38 47 72 29 40 78 26 INFO: Distances between consecutive points in test subject's space are 9 8 9 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 93 103 52 80 87 34 78 74 INFO: Distances between consecutive points are 24 22 21 22 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 74 37 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 8 8 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543301 INFO: Points where local peeks in curvature occur are 51 117 101 (curv = 0.0925797) 56 96 104 (curv = 0.0835785) 55 88 102 (curv = 0.0685132) 52 82 95 (curv = 0.0938857) INFO: Intermediate dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 INFO: Final dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 34 128 101 52 115 102 56 93 103 50 82 85 34 78 75 INFO: Distances between consecutive points are 22 22 22 19 INFO: Selected control points in test subject's space are 41 86 43 48 81 41 50 74 37 47 73 30 41 73 26 INFO: Distances between consecutive points in test subject's space are 9 8 8 7 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 74 38 48 71 31 41 73 26 INFO: Distances between consecutive points in test subject's space are 10 8 8 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0389276 INFO: Points where local peeks in curvature occur are 54 120 102 (curv = 0.0544164) 55 98 105 (curv = 0.0787634) 53 84 96 (curv = 0.0727762) 52 80 84 (curv = 0.0546124) INFO: Intermediate dominant points are 49 139 101 54 120 102 55 98 105 53 84 96 36 87 63 INFO: Final dominant points are 49 139 101 54 120 102 55 98 105 53 84 96 36 87 63 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 139 101 54 117 103 55 95 104 52 80 85 36 87 63 INFO: Distances between consecutive points are 23 22 24 28 INFO: Selected control points in test subject's space are 47 90 44 49 82 41 49 74 38 48 72 30 41 78 24 INFO: Distances between consecutive points in test subject's space are 9 9 8 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0512121 INFO: Points where local peeks in curvature occur are 56 138 99 (curv = 0.154444) 58 130 100 (curv = 0.0788698) 54 118 104 (curv = 0.0909172) 54 96 105 (curv = 0.0656089) 51 81 95 (curv = 0.0578037) 48 77 78 (curv = 0.0629418) INFO: Intermediate dominant points are 43 142 105 56 138 99 54 118 104 54 96 105 37 79 66 INFO: Final dominant points are 43 142 105 56 138 99 54 118 104 54 96 105 37 79 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 142 105 57 127 101 54 102 105 50 79 90 37 79 66 INFO: Distances between consecutive points are 21 25 28 27 INFO: Selected control points in test subject's space are 44 90 46 50 86 42 49 76 40 47 71 31 42 74 23 INFO: Distances between consecutive points in test subject's space are 8 10 10 10 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0494247 INFO: Points where local peeks in curvature occur are 54 117 105 (curv = 0.13229) 55 100 106 (curv = 0.0681994) 54 82 95 (curv = 0.0588466) 51 78 83 (curv = 0.0653682) INFO: Intermediate dominant points are 32 130 110 54 117 105 55 94 105 51 78 83 36 80 67 INFO: Final dominant points are 32 130 110 54 117 105 54 83 96 51 78 83 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 130 110 53 118 105 55 94 105 52 78 85 36 80 67 INFO: Distances between consecutive points are 25 24 26 24 INFO: Selected control points in test subject's space are 40 85 46 48 82 42 49 74 38 48 71 29 41 75 24 INFO: Distances between consecutive points in test subject's space are 9 9 10 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0488118 INFO: Points where local peeks in curvature occur are 56 118 102 (curv = 0.0846267) 58 108 104 (curv = 0.064302) 54 88 96 (curv = 0.084832) 50 85 84 (curv = 0.0628578) INFO: Intermediate dominant points are 37 138 107 56 118 102 58 101 103 54 88 96 36 83 74 INFO: Final dominant points are 37 138 107 56 118 102 58 99 102 54 88 96 36 83 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 138 107 55 120 102 58 101 103 52 86 88 36 83 74 INFO: Distances between consecutive points are 26 19 22 21 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 39 48 74 31 41 75 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 8 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0478581 INFO: Points where local peeks in curvature occur are 54 119 103 (curv = 0.0684585) 57 108 104 (curv = 0.0547259) 57 96 102 (curv = 0.0625916) 54 90 97 (curv = 0.0779447) 52 87 88 (curv = 0.0610537) 45 84 80 (curv = 0.052824) INFO: Intermediate dominant points are 35 138 109 54 119 103 57 102 103 54 90 97 34 82 75 INFO: Final dominant points are 35 138 109 54 119 103 57 99 103 54 90 97 34 82 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 138 109 53 122 103 57 102 103 53 87 89 34 82 75 INFO: Distances between consecutive points are 25 20 21 24 INFO: Selected control points in test subject's space are 41 88 47 48 84 42 50 77 39 48 74 32 41 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0488205 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0632585) 58 101 102 (curv = 0.0558445) 57 97 102 (curv = 0.0633297) 53 88 94 (curv = 0.0709756) 51 87 87 (curv = 0.0574877) 44 84 80 (curv = 0.0611981) INFO: Intermediate dominant points are 36 137 105 55 119 101 57 100 102 53 88 94 30 82 77 INFO: Final dominant points are 36 137 105 55 119 101 57 99 102 53 88 94 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 105 55 119 101 57 100 102 50 86 85 30 82 77 INFO: Distances between consecutive points are 26 19 23 22 INFO: Selected control points in test subject's space are 42 88 45 49 83 41 50 76 38 47 74 31 39 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0518764 INFO: Points where local peeks in curvature occur are 54 118 102 (curv = 0.0750082) 57 104 103 (curv = 0.0673786) 53 90 96 (curv = 0.074314) 50 87 86 (curv = 0.0641537) 43 84 79 (curv = 0.0872907) INFO: Intermediate dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 INFO: Final dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 135 102 54 118 102 57 99 102 51 88 87 30 83 77 INFO: Distances between consecutive points are 25 19 20 24 INFO: Selected control points in test subject's space are 41 88 44 49 82 41 50 76 38 47 74 32 39 74 28 INFO: Distances between consecutive points in test subject's space are 10 7 7 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0511857 INFO: Points where local peeks in curvature occur are 54 119 102 (curv = 0.0769944) 57 97 102 (curv = 0.0642214) 54 90 97 (curv = 0.0872918) 51 87 87 (curv = 0.0563749) 44 84 80 (curv = 0.0717043) INFO: Intermediate dominant points are 36 137 106 54 119 102 57 100 102 54 90 97 32 82 77 INFO: Final dominant points are 36 137 106 54 119 102 57 100 102 54 90 97 32 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 106 54 120 102 57 100 102 51 87 87 32 82 77 INFO: Distances between consecutive points are 25 20 21 22 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 38 47 74 31 40 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 8 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 79 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.050021 INFO: Points where local peeks in curvature occur are 55 118 102 (curv = 0.0738944) 57 97 102 (curv = 0.0768896) 53 89 95 (curv = 0.0774534) 51 87 86 (curv = 0.064262) 44 84 80 (curv = 0.0713094) INFO: Intermediate dominant points are 36 137 106 55 118 102 57 99 102 53 89 95 30 82 77 INFO: Final dominant points are 36 137 106 55 118 102 57 98 102 53 89 95 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 106 54 120 102 57 101 102 51 87 87 30 82 77 INFO: Distances between consecutive points are 25 19 21 24 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 77 38 47 74 31 39 74 27 INFO: Distances between consecutive points in test subject's space are 9 7 8 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.051764 INFO: Points where local peeks in curvature occur are 45 126 103 (curv = 0.0619513) 54 118 103 (curv = 0.0755984) 57 100 103 (curv = 0.0609776) 54 90 97 (curv = 0.0734852) 51 86 88 (curv = 0.0583922) 45 84 81 (curv = 0.0810162) INFO: Intermediate dominant points are 34 138 109 54 118 103 54 90 97 45 84 81 27 82 77 INFO: Final dominant points are 34 138 109 54 118 103 54 90 97 45 84 81 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 138 109 52 121 103 57 101 103 51 86 88 27 82 77 INFO: Distances between consecutive points are 25 21 22 27 INFO: Selected control points in test subject's space are 41 88 47 48 83 42 50 76 39 47 74 31 38 74 27 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0506591 INFO: Points where local peeks in curvature occur are 55 118 102 (curv = 0.0752598) 57 101 103 (curv = 0.0565709) 57 97 101 (curv = 0.0656447) 53 89 95 (curv = 0.0757841) 45 84 81 (curv = 0.0758142) INFO: Intermediate dominant points are 36 137 107 55 118 102 53 89 95 45 84 81 30 82 78 INFO: Final dominant points are 36 137 107 55 118 102 53 89 95 45 84 81 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 107 54 120 102 57 100 102 50 87 86 30 82 78 INFO: Distances between consecutive points are 25 20 22 22 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0503007 INFO: Points where local peeks in curvature occur are 48 125 102 (curv = 0.055809) 54 117 103 (curv = 0.0643) 57 99 103 (curv = 0.0941857) 53 89 95 (curv = 0.0698788) 51 87 87 (curv = 0.0667055) 44 84 81 (curv = 0.101995) INFO: Intermediate dominant points are 34 138 108 54 117 103 57 99 103 44 84 81 27 83 77 INFO: Final dominant points are 34 138 108 54 117 103 57 99 103 44 84 81 27 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 138 108 52 121 102 57 100 103 49 86 85 27 83 77 INFO: Distances between consecutive points are 25 22 24 24 INFO: Selected control points in test subject's space are 41 88 47 48 83 42 50 76 39 47 74 31 38 74 28 INFO: Distances between consecutive points in test subject's space are 10 8 9 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0541642 INFO: Points where local peeks in curvature occur are 54 118 102 (curv = 0.080978) 57 102 103 (curv = 0.0832649) 53 89 95 (curv = 0.0800759) 50 87 86 (curv = 0.0736194) 42 83 80 (curv = 0.0707197) INFO: Intermediate dominant points are 36 134 103 54 118 102 57 102 103 53 89 95 30 83 77 INFO: Final dominant points are 36 134 103 54 118 102 57 102 103 53 89 95 30 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 134 103 54 117 102 56 99 102 50 87 86 30 83 77 INFO: Distances between consecutive points are 25 18 21 22 INFO: Selected control points in test subject's space are 42 88 44 49 82 41 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 10 7 8 9 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0521376 INFO: Points where local peeks in curvature occur are 54 117 102 (curv = 0.0597245) 57 101 103 (curv = 0.0642365) 56 97 102 (curv = 0.0643619) 53 89 95 (curv = 0.0806126) 46 85 81 (curv = 0.0876695) INFO: Intermediate dominant points are 36 134 104 54 117 102 53 89 95 46 85 81 30 83 78 INFO: Final dominant points are 36 134 104 54 117 102 53 89 95 46 85 81 30 83 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 134 104 54 117 102 56 98 102 50 87 86 30 83 78 INFO: Distances between consecutive points are 25 19 20 22 INFO: Selected control points in test subject's space are 42 87 45 49 82 41 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 9 7 8 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0559283 INFO: Points where local peeks in curvature occur are 45 129 97 (curv = 0.0682105) 55 122 100 (curv = 0.115353) 56 108 104 (curv = 0.0671874) 57 98 104 (curv = 0.0735013) 53 87 98 (curv = 0.0667873) 48 83 81 (curv = 0.0675755) 43 82 76 (curv = 0.0737202) INFO: Intermediate dominant points are 32 137 101 55 122 100 57 98 104 43 82 76 29 72 77 INFO: Final dominant points are 32 137 101 55 122 100 57 98 104 43 82 76 29 72 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 137 101 55 121 100 57 97 103 49 83 84 29 72 77 INFO: Distances between consecutive points are 28 24 25 24 INFO: Selected control points in test subject's space are 40 89 44 49 84 41 50 75 38 47 73 30 39 70 26 INFO: Distances between consecutive points in test subject's space are 11 10 9 9 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0567715 INFO: Points where local peeks in curvature occur are 44 129 97 (curv = 0.0653868) 53 124 100 (curv = 0.0911758) 55 114 101 (curv = 0.059519) 57 106 104 (curv = 0.0621205) 57 98 104 (curv = 0.0762165) 51 84 93 (curv = 0.0678794) 46 83 78 (curv = 0.084517) INFO: Intermediate dominant points are 32 137 102 53 124 100 57 98 104 46 83 78 29 72 77 INFO: Final dominant points are 32 137 102 53 124 100 57 98 104 46 83 78 29 72 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 137 102 54 122 101 57 98 104 49 83 85 29 72 77 INFO: Distances between consecutive points are 27 24 25 24 INFO: Selected control points in test subject's space are 40 89 45 49 84 42 50 75 39 47 73 30 39 70 26 INFO: Distances between consecutive points in test subject's space are 11 10 10 9 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0496265 INFO: Points where local peeks in curvature occur are 53 121 101 (curv = 0.132282) 55 100 106 (curv = 0.0717278) 55 82 97 (curv = 0.0657936) 51 77 91 (curv = 0.0799275) 44 79 76 (curv = 0.062834) INFO: Intermediate dominant points are 31 136 98 53 121 101 55 100 106 51 77 91 24 85 66 INFO: Final dominant points are 31 136 98 53 121 101 55 100 106 51 77 91 24 85 66 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 31 136 98 53 119 101 55 94 104 47 77 85 24 85 66 INFO: Distances between consecutive points are 28 25 27 31 INFO: Selected control points in test subject's space are 39 89 43 48 83 41 49 74 38 46 71 29 36 76 24 INFO: Distances between consecutive points in test subject's space are 11 10 10 12 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500944 INFO: Points where local peeks in curvature occur are 55 131 93 (curv = 0.144942) 54 119 98 (curv = 0.0503215) 55 102 103 (curv = 0.0703204) 56 96 102 (curv = 0.0763136) 54 84 94 (curv = 0.084076) INFO: Intermediate dominant points are 36 138 86 55 131 93 55 102 103 54 84 94 34 93 67 INFO: Final dominant points are 36 138 86 55 131 93 55 102 103 54 84 94 34 93 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 55 125 96 55 101 103 52 82 88 34 93 67 INFO: Distances between consecutive points are 25 25 24 30 INFO: Selected control points in test subject's space are 41 92 40 49 86 41 49 76 39 48 72 31 40 79 26 INFO: Distances between consecutive points in test subject's space are 10 10 9 12 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0475605 INFO: Points where local peeks in curvature occur are 55 131 93 (curv = 0.111354) 56 97 103 (curv = 0.0773199) 55 85 96 (curv = 0.0696796) 51 81 88 (curv = 0.0487028) 49 81 80 (curv = 0.0552002) INFO: Intermediate dominant points are 36 138 86 55 131 93 56 97 103 49 81 80 32 93 66 INFO: Final dominant points are 36 138 86 55 131 93 56 97 103 49 81 80 32 93 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 56 125 96 55 102 103 52 82 89 32 93 66 INFO: Distances between consecutive points are 26 24 25 32 INFO: Selected control points in test subject's space are 41 92 40 50 86 41 49 77 39 48 72 31 40 79 26 INFO: Distances between consecutive points in test subject's space are 11 9 9 12 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0495624 INFO: Points where local peeks in curvature occur are 56 123 97 (curv = 0.117717) 54 118 100 (curv = 0.0632483) 54 94 105 (curv = 0.0797024) 52 86 101 (curv = 0.0916282) 48 84 77 (curv = 0.051318) 35 85 63 (curv = 0.0898769) INFO: Intermediate dominant points are 37 135 81 56 123 97 52 86 101 35 85 63 23 94 52 INFO: Final dominant points are 37 135 81 56 123 97 52 86 101 35 85 63 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 116 100 52 88 102 47 83 75 23 94 52 INFO: Distances between consecutive points are 32 28 28 35 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 46 75 27 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 10 13 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.050069 INFO: Points where local peeks in curvature occur are 52 121 99 (curv = 0.130207) 54 98 103 (curv = 0.0745749) 53 83 93 (curv = 0.0644416) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 INFO: Final dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 99 54 96 103 49 80 84 28 90 70 INFO: Distances between consecutive points are 25 22 25 27 INFO: Selected control points in test subject's space are 39 87 40 48 83 40 49 75 38 47 72 29 38 78 27 INFO: Distances between consecutive points in test subject's space are 10 8 10 11 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 113 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0516034 INFO: Points where local peeks in curvature occur are 55 126 96 (curv = 0.11575) 55 99 105 (curv = 0.0607377) 52 87 102 (curv = 0.0960767) 48 84 78 (curv = 0.0519289) 34 86 60 (curv = 0.0937957) INFO: Intermediate dominant points are 38 135 83 55 126 96 52 87 102 34 86 60 23 94 52 INFO: Final dominant points are 38 135 83 55 126 96 52 87 102 34 86 60 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 135 83 54 115 101 52 86 101 43 83 71 23 94 52 INFO: Distances between consecutive points are 31 29 31 30 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 44 75 26 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 11 11 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498399 INFO: Points where local peeks in curvature occur are 56 129 94 (curv = 0.150427) 56 96 103 (curv = 0.087756) 53 83 91 (curv = 0.0747506) 45 83 74 (curv = 0.0605071) INFO: Intermediate dominant points are 36 138 86 56 129 94 56 96 103 45 83 74 34 93 67 INFO: Final dominant points are 36 138 86 56 129 94 56 96 103 45 83 74 34 93 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 56 125 96 55 101 103 51 82 85 34 93 67 INFO: Distances between consecutive points are 26 25 26 27 INFO: Selected control points in test subject's space are 41 92 40 50 86 41 49 76 39 47 73 30 40 79 26 INFO: Distances between consecutive points in test subject's space are 11 10 10 10 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 39 87 43 48 82 41 50 74 37 47 72 30 41 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 7 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0412883 INFO: Points where local peeks in curvature occur are 53 120 102 (curv = 0.070965) 55 97 103 (curv = 0.0526155) 54 91 101 (curv = 0.0534358) 53 88 99 (curv = 0.0540015) 53 84 94 (curv = 0.0477669) 49 80 79 (curv = 0.0741549) INFO: Intermediate dominant points are 50 140 101 53 120 102 53 88 99 49 80 79 33 83 66 INFO: Final dominant points are 50 140 101 53 120 102 53 88 99 49 80 79 33 83 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 140 101 54 118 102 55 96 103 51 82 86 33 83 66 INFO: Distances between consecutive points are 22 22 22 27 INFO: Selected control points in test subject's space are 47 90 45 49 82 41 49 75 38 47 73 30 40 76 24 INFO: Distances between consecutive points in test subject's space are 9 8 8 10 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0564202 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.10482) 57 97 104 (curv = 0.070647) 55 86 101 (curv = 0.0966388) 52 80 83 (curv = 0.0597643) INFO: Intermediate dominant points are 31 128 99 54 114 102 55 86 101 51 80 81 28 75 75 INFO: Final dominant points are 31 128 99 54 114 102 55 86 101 40 83 71 28 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 54 114 102 57 90 103 51 80 82 28 75 75 INFO: Distances between consecutive points are 27 24 24 25 INFO: Selected control points in test subject's space are 39 86 42 49 81 41 50 73 37 47 72 29 38 72 26 INFO: Distances between consecutive points in test subject's space are 11 9 9 9 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 105 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0466912 INFO: Points where local peeks in curvature occur are 55 124 96 (curv = 0.110999) 54 96 106 (curv = 0.105725) 52 91 104 (curv = 0.0861658) 52 86 100 (curv = 0.0795491) 48 84 77 (curv = 0.0566965) INFO: Intermediate dominant points are 37 135 81 55 124 96 54 96 106 48 84 77 34 93 56 INFO: Final dominant points are 37 135 81 55 124 96 54 96 106 48 84 77 34 93 56 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 118 99 52 91 104 49 84 79 34 93 56 INFO: Distances between consecutive points are 30 28 26 29 INFO: Selected control points in test subject's space are 42 91 38 49 83 40 48 73 37 47 74 28 40 81 23 INFO: Distances between consecutive points in test subject's space are 11 10 9 11 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 39 86 42 48 82 41 50 74 37 47 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 8 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.049802 INFO: Points where local peeks in curvature occur are 55 125 96 (curv = 0.112727) 54 97 106 (curv = 0.0935555) 52 91 104 (curv = 0.0859216) 52 87 100 (curv = 0.0903343) 36 86 62 (curv = 0.0867908) INFO: Intermediate dominant points are 37 135 81 55 125 96 54 97 106 36 86 62 23 95 52 INFO: Final dominant points are 37 135 81 55 125 96 54 97 106 36 86 62 23 95 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 116 100 52 88 102 46 84 74 23 95 52 INFO: Distances between consecutive points are 32 28 29 34 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 45 75 27 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 10 12 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 39 87 43 48 82 41 50 73 37 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 10 7 9 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0522863 INFO: Points where local peeks in curvature occur are 53 116 101 (curv = 0.135207) 57 98 104 (curv = 0.0875347) 55 84 99 (curv = 0.078809) 52 80 86 (curv = 0.0670164) INFO: Intermediate dominant points are 29 135 101 53 116 101 55 84 99 52 80 86 34 78 74 INFO: Final dominant points are 29 135 101 53 116 101 55 84 99 52 80 86 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 29 135 101 52 118 101 57 95 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 29 24 23 23 INFO: Selected control points in test subject's space are 39 88 44 48 83 41 50 74 38 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 11 10 8 9 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0474118 INFO: Points where local peeks in curvature occur are 53 118 100 (curv = 0.0854662) 55 97 105 (curv = 0.0776476) 52 86 101 (curv = 0.0937141) 47 83 76 (curv = 0.0597526) 36 85 63 (curv = 0.0882319) INFO: Intermediate dominant points are 28 134 88 53 118 100 52 86 101 36 85 63 23 94 52 INFO: Final dominant points are 28 134 88 53 118 100 52 86 101 36 85 63 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 28 134 88 54 115 101 52 86 101 44 83 73 23 94 52 INFO: Distances between consecutive points are 35 29 29 32 INFO: Selected control points in test subject's space are 38 90 40 49 82 40 48 72 36 45 75 26 36 82 22 INFO: Distances between consecutive points in test subject's space are 14 11 11 12 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 39 86 42 48 82 41 50 74 38 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 119 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0425463 INFO: Points where local peeks in curvature occur are 56 92 103 (curv = 0.0785197) 55 87 101 (curv = 0.0897688) 44 77 75 (curv = 0.136841) 38 90 61 (curv = 0.0900768) INFO: Intermediate dominant points are 53 135 99 55 104 103 55 87 101 44 77 75 45 119 43 INFO: Final dominant points are 53 135 99 55 101 103 55 87 101 44 77 75 45 119 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 135 99 55 105 102 53 81 92 38 88 62 45 119 43 INFO: Distances between consecutive points are 30 26 34 37 INFO: Selected control points in test subject's space are 48 89 43 49 78 39 48 71 32 42 78 24 45 92 23 INFO: Distances between consecutive points in test subject's space are 12 10 12 14 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0476297 INFO: Points where local peeks in curvature occur are 52 120 99 (curv = 0.0766869) 55 97 103 (curv = 0.0852679) 52 81 90 (curv = 0.0591867) 50 81 87 (curv = 0.0561134) 45 81 77 (curv = 0.0570366) 43 83 73 (curv = 0.0611955) INFO: Intermediate dominant points are 52 130 97 54 110 101 55 97 103 43 83 73 27 90 70 INFO: Final dominant points are 52 130 97 54 107 102 55 97 103 43 83 73 27 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 130 97 54 110 101 54 89 99 46 81 78 27 90 70 INFO: Distances between consecutive points are 20 21 24 22 INFO: Selected control points in test subject's space are 48 87 42 49 80 40 49 73 35 45 73 28 38 78 27 INFO: Distances between consecutive points in test subject's space are 7 9 8 9 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0422985 INFO: Points where local peeks in curvature occur are 56 131 101 (curv = 0.0792025) 55 98 104 (curv = 0.0764952) 54 88 99 (curv = 0.0566935) 50 81 80 (curv = 0.0723551) INFO: Intermediate dominant points are 50 144 100 56 131 101 55 98 104 50 81 80 36 82 68 INFO: Final dominant points are 50 144 100 56 131 101 55 98 104 50 81 80 36 82 68 INFO: Selected control points are 50 144 100 55 129 100 55 98 104 50 80 82 36 82 68 INFO: Distances between consecutive points are 16 31 29 20 INFO: Selected control points in test subject's space are 47 92 45 49 86 42 49 75 39 47 72 29 41 75 25 INFO: Distances between consecutive points in test subject's space are 7 11 11 8 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 20.2 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Sun Mar 8 17:10:45 CET 2020 New invocation of trac-all Sun Mar 8 18:34:13 CET 2020 /project/2419116.01/scripts /opt/freesurfer/6.0/bin/trac-all -path -c /project/2419116.01/Freesurfer/001/tracula_out/tracula_config.txt Subject 001 SUBJECTS_DIR /project/2419116.01/Freesurfer/001 FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75125288 5866444 21860612 50529196 31209200 Swap: 52428796 33771880 18656916 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-17:34:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75150852 5840880 21860612 50529196 31183636 Swap: 52428796 33771880 18656916 #------------------------------------- /opt/freesurfer/6.0/bin/trac-paths #------------------------------------- #@# Path reconstruction Sun Mar 8 18:34:13 CET 2020 rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz 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/project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX niiRead(): error opening file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX/merged_ph1samples.nii.gz ERROR: Could not read /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX/merged_ph1samples.nii.gz Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux trac-paths exited with ERRORS at Sun Mar 8 18:34:18 CET 2020 New invocation of trac-all Sun Mar 8 19:12:12 CET 2020 /project/2419116.01/scripts /opt/freesurfer/6.0/bin/trac-all -path -c /project/2419116.01/Freesurfer/001/tracula_out/tracula_config.txt Subject 001 SUBJECTS_DIR /project/2419116.01/Freesurfer/001 FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75208768 5773428 21860284 50538732 31126392 Swap: 52428796 33771368 18657428 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-18:12:12-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-18:12:12-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-18:12:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-18:12:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-18:12:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/08-18:12:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/08-18:12:13-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75208292 5773340 21860284 50539296 31126876 Swap: 52428796 33771368 18657428 #------------------------------------- /opt/freesurfer/6.0/bin/trac-paths #------------------------------------- #@# Path reconstruction Sun Mar 8 19:12:13 CET 2020 rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Done in 131.038 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 2 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Done in 124.672 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Done in 110.112 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Done in 105.839 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 5 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Done in 59.94 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 6 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Done in 76.231 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 7 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Done in 23.693 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 8 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Done in 81.934 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 9 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Done in 75.791 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 10 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 19.94 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 11 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Done in 97.294 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 12 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Done in 107.099 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 13 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Done in 57.253 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 14 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Done in 53.213 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Done in 65.752 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Done in 69.345 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 17 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Done in 109.09 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt WARN: Initial start point 47 92 45 is not in start ROI WARN: Replacing with closest point in start ROI (47 91 45) Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 18 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Done in 94.533 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75833656 5102568 21860356 50584704 30500768 Swap: 52428796 33770600 18658196 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Priors Sun Mar 8 19:37:14 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.389105.txt --trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 0 49 --rois dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 7 5 --xstr --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.389105.txt --trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 0 49 --rois dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 7 5 --xstr --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.389105.txt Location of streamline files relative to base: dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 0 49 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 7 5 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2469 streamlines for straying off mask INFO: Rejected 233 streamlines for reversing direction INFO: Rejected 123 streamlines as length outliers INFO: Have 6950 total streamlines (min/mean/max length: 87/134/166) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 2... Matching streamline ends INFO: Have 5076 non-truncated streamlines (min/mean/max length: 87/136/168) INFO: Center of mass of start points: (102+/-7, 38+/-8, 98+/-16) INFO: Center of mass of midpoints: (90+/-3, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 98+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 61291 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 63 76 31 54 70 29 54 61 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 12 11 10 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 28 65 76 31 55 71 30 52 63 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 8 9 11 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0506223 INFO: Points where local peeks in curvature occur are 107 44 88 (curv = 0.0843619) 117 56 86 (curv = 0.137763) 89 91 85 (curv = 0.0854668) 61 63 87 (curv = 0.0904317) 63 54 86 (curv = 0.0804745) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 72 86 89 91 85 61 63 87 67 49 88 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 103 84 86 89 91 85 61 63 87 71 43 99 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 91 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 29 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0497442 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.10325) 116 55 86 (curv = 0.109404) 89 91 85 (curv = 0.0949491) 60 60 87 (curv = 0.13078) 65 52 87 (curv = 0.0663431) 70 45 94 (curv = 0.0525269) INFO: Intermediate dominant points are 98 38 109 116 55 86 110 72 85 89 91 85 60 60 87 70 45 94 72 39 114 INFO: Final dominant points are 98 38 109 116 55 86 102 84 85 89 91 85 60 60 87 70 45 94 72 39 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 38 109 109 46 86 111 70 85 92 90 84 69 76 87 64 53 87 72 39 114 INFO: Distances between consecutive points are 27 24 28 27 24 31 INFO: Selected control points in test subject's space are 67 54 30 71 61 24 72 69 28 64 76 31 55 70 29 53 63 26 56 54 32 INFO: Distances between consecutive points in test subject's space are 10 9 11 11 8 11 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0477143 INFO: Points where local peeks in curvature occur are 105 42 89 (curv = 0.0636933) 109 46 85 (curv = 0.0675706) 116 56 85 (curv = 0.113) 95 90 84 (curv = 0.0810775) 90 91 84 (curv = 0.0781857) 61 62 87 (curv = 0.0798498) 63 55 86 (curv = 0.0870717) 65 51 87 (curv = 0.075599) 69 47 91 (curv = 0.0615153) INFO: Intermediate dominant points are 99 39 103 116 56 85 109 75 85 95 90 84 65 71 87 63 55 86 72 39 111 INFO: Final dominant points are 99 39 103 116 56 85 107 79 85 95 90 84 63 68 87 63 55 86 72 39 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 113 50 85 110 73 85 90 91 84 67 75 86 65 52 87 72 39 111 INFO: Distances between consecutive points are 25 23 27 28 23 28 INFO: Selected control points in test subject's space are 67 56 28 72 62 24 71 70 28 63 76 31 54 70 29 53 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 10 11 9 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0497845 INFO: Points where local peeks in curvature occur are 110 44 93 (curv = 0.0756047) 112 50 86 (curv = 0.0996665) 118 64 86 (curv = 0.111878) 107 84 82 (curv = 0.0545738) 80 89 84 (curv = 0.0636875) 62 66 87 (curv = 0.112054) 70 49 87 (curv = 0.0736929) INFO: Intermediate dominant points are 106 41 111 110 44 93 118 64 86 80 89 84 62 66 87 70 49 87 76 38 112 INFO: Final dominant points are 106 41 111 110 44 93 118 64 86 80 89 84 62 66 87 70 49 87 76 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 111 111 49 87 114 73 84 92 90 83 68 77 86 68 53 86 76 38 112 INFO: Distances between consecutive points are 26 24 28 27 24 31 INFO: Selected control points in test subject's space are 70 55 31 72 62 25 73 70 28 64 76 30 54 71 29 54 63 25 58 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 11 9 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0503817 INFO: Points where local peeks in curvature occur are 107 45 86 (curv = 0.0956417) 116 56 85 (curv = 0.128441) 92 90 84 (curv = 0.091457) 82 88 85 (curv = 0.0708764) 61 60 87 (curv = 0.093314) INFO: Intermediate dominant points are 99 39 109 116 56 85 111 70 85 92 90 84 67 74 87 61 60 87 72 42 114 INFO: Final dominant points are 99 39 109 116 56 85 106 79 85 92 90 84 67 74 87 61 60 87 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 107 45 86 112 69 85 91 90 84 68 75 87 66 50 89 72 42 114 INFO: Distances between consecutive points are 25 25 30 28 25 27 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 69 28 64 76 31 54 70 29 54 61 26 56 55 32 INFO: Distances between consecutive points in test subject's space are 8 10 11 12 9 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498937 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0939838) 116 55 85 (curv = 0.1206) 92 90 84 (curv = 0.0923814) 82 88 85 (curv = 0.0708764) 60 61 87 (curv = 0.0968523) 70 45 98 (curv = 0.0510343) INFO: Intermediate dominant points are 98 39 108 116 55 85 111 71 85 92 90 84 60 61 87 70 45 98 72 42 114 INFO: Final dominant points are 98 39 108 116 55 85 105 80 85 92 90 84 60 61 87 70 45 98 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 108 108 45 86 112 68 85 92 90 84 70 77 87 63 53 88 72 42 114 INFO: Distances between consecutive points are 25 23 30 26 25 30 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 27 64 76 31 55 71 30 52 62 26 56 55 32 INFO: Distances between consecutive points in test subject's space are 8 9 12 10 10 10 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0487474 INFO: Points where local peeks in curvature occur are 105 43 88 (curv = 0.0736768) 109 46 84 (curv = 0.0652874) 115 54 84 (curv = 0.0999097) 115 61 85 (curv = 0.0644986) 92 90 84 (curv = 0.0698463) 85 90 85 (curv = 0.0750864) 61 59 87 (curv = 0.109151) 65 52 87 (curv = 0.0716111) 69 47 91 (curv = 0.0650439) INFO: Intermediate dominant points are 98 39 100 115 54 84 108 76 84 85 90 85 61 59 87 69 46 92 72 39 114 INFO: Final dominant points are 98 39 100 115 54 84 99 87 85 85 90 85 61 59 87 72 42 102 72 39 114 INFO: Selected control points are 98 39 100 115 53 83 101 86 85 82 90 86 61 60 87 73 42 100 72 39 114 INFO: Distances between consecutive points are 28 36 19 37 25 14 INFO: Selected control points in test subject's space are 67 56 27 73 64 24 68 74 30 60 76 31 52 65 27 57 57 28 56 54 32 INFO: Distances between consecutive points in test subject's space are 10 13 8 14 9 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 68.045 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 1 streamlines to be excluded Processing pathway 2 of 2... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0417261 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0653307) 67 155 78 (curv = 0.0707498) 66 144 82 (curv = 0.0916017) INFO: Intermediate dominant points are 70 185 87 65 168 78 66 144 82 71 133 80 81 116 74 INFO: Final dominant points are 70 185 87 67 153 79 66 144 82 77 125 77 81 116 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 185 87 65 168 78 66 150 80 71 133 80 81 116 74 INFO: Distances between consecutive points are 20 18 18 21 INFO: Selected control points in test subject's space are 55 108 48 53 103 42 53 97 40 55 91 37 59 86 32 INFO: Distances between consecutive points in test subject's space are 8 6 7 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 65 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0399296 INFO: Points where local peeks in curvature occur are 65 169 78 (curv = 0.0656252) 67 154 78 (curv = 0.0737427) 67 143 82 (curv = 0.0880418) INFO: Intermediate dominant points are 73 183 81 65 169 78 67 143 82 72 132 80 81 116 74 INFO: Final dominant points are 73 183 81 65 169 78 67 143 82 77 124 77 81 116 74 INFO: Selected control points are 73 183 81 65 168 78 67 143 81 76 125 78 81 116 74 INFO: Distances between consecutive points are 17 25 20 11 INFO: Selected control points in test subject's space are 56 108 45 53 103 42 54 94 39 57 89 35 59 86 32 INFO: Distances between consecutive points in test subject's space are 7 10 7 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 75.089 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Sun Mar 8 19:40:30 CET 2020 /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 1 of 2... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 9 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Done in 171.623 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 2 of 2... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 25.779 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 63.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 75835064 5102244 21860348 50583620 30501956 Swap: 52428796 33770088 18658708 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Priors Sun Mar 8 19:44:16 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.391264.txt --trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 49 --rois dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 5 --xstr --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.391264.txt --trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 49 --rois dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 5 --xstr --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: rh.atr_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.391264.txt Location of streamline files relative to base: dlabel/mni/rh.atr_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 49 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 2 streamlines to be excluded Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 1... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0417261 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0653307) 67 155 78 (curv = 0.0707498) 66 144 82 (curv = 0.0916017) INFO: Intermediate dominant points are 70 185 87 65 168 78 66 144 82 71 133 80 81 116 74 INFO: Final dominant points are 70 185 87 67 153 79 66 144 82 77 125 77 81 116 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 185 87 65 168 78 66 150 80 71 133 80 81 116 74 INFO: Distances between consecutive points are 20 18 18 21 INFO: Selected control points in test subject's space are 55 108 48 53 103 42 53 97 40 55 91 37 59 86 32 INFO: Distances between consecutive points in test subject's space are 8 6 7 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0445485 INFO: Points where local peeks in curvature occur are 65 166 81 (curv = 0.109134) 68 160 80 (curv = 0.0879663) 67 144 80 (curv = 0.0813435) 79 125 76 (curv = 0.0551325) INFO: Intermediate dominant points are 72 192 86 65 166 81 67 144 80 74 134 78 81 115 77 INFO: Final dominant points are 72 192 86 65 166 81 67 144 80 79 125 76 81 115 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 192 86 69 174 85 67 154 80 73 136 79 81 115 77 INFO: Distances between consecutive points are 18 21 19 23 INFO: Selected control points in test subject's space are 56 110 49 55 104 45 54 98 40 56 92 37 59 85 33 INFO: Distances between consecutive points in test subject's space are 7 8 7 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0466508 INFO: Points where local peeks in curvature occur are 70 177 86 (curv = 0.0482193) 66 167 82 (curv = 0.0989591) 68 159 80 (curv = 0.0849014) 66 150 80 (curv = 0.0672404) 67 143 80 (curv = 0.0658386) 79 125 76 (curv = 0.0530125) INFO: Intermediate dominant points are 72 192 86 66 167 82 66 150 80 74 134 78 81 115 76 INFO: Final dominant points are 72 192 86 66 167 82 66 150 80 79 125 76 81 115 76 INFO: Selected control points are 72 192 86 68 167 82 66 150 80 78 126 77 81 115 76 INFO: Distances between consecutive points are 26 17 27 11 INFO: Selected control points in test subject's space are 56 110 49 54 102 43 53 97 40 58 89 35 59 86 32 INFO: Distances between consecutive points in test subject's space are 10 6 11 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 87.408 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Sun Mar 8 19:46:14 CET 2020 /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 1 of 1... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 4 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 83.403 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 63.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 106.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.cst Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr... Done in 0.417 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.cst Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr... Done in 0.412 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.ilf Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr... Done in 0.4 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.ilf Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr... Done in 0.407 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.unc Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr... Done in 0.397 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.unc Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr... Done in 0.426 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fmajor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fmajor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: fmajor Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr... Done in 0.419 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fminor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fminor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: fminor Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr... Done in 0.415 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.atr Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr... Done in 0.397 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.atr Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr... Done in 0.39 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.ccg Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr... Done in 0.391 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.ccg Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr... Done in 0.389 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.cab Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr... Done in 0.393 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.cab Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr... Done in 0.397 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.slfp Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr... Done in 0.418 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.slfp Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr... Done in 0.41 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.slft Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr... Done in 0.422 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.slft Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr... Done in 0.443 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_mergepaths --indir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz --ctab /opt/freesurfer/6.0/FreeSurferColorLUT.txt --thresh .2 cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_mergepaths --indir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz --ctab /opt/freesurfer/6.0/FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath Input files: fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Output file: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz Color table file: /opt/freesurfer/6.0/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 18... Threshold: 34.2 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 51 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 54.4 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 118.8 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 78.8 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 42.4 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 64.4 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 34 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 46.4 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 59.6 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 61.2 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 127 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 80.2 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 42.2 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 74.4 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 43 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 42.6 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 49.2 Name: Right Uncinate Fasciculus Done in 2.033 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Sun Mar 8 19:48:22 CET 2020 New invocation of trac-all Wed Mar 18 12:39:22 CET 2020 /project/2419116.01/scripts /opt/freesurfer/6.0/bin/trac-all -prep -c /project/2419116.01/Freesurfer/001/tracula_out/tracula_config.txt Subject 001 SUBJECTS_DIR /project/2419116.01/Freesurfer/001 FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 86149052 2111032 23726652 43260844 18258032 Swap: 52428796 29822640 22606156 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/18-11:39:22-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 86150636 2108856 23726988 43261436 18256100 Swap: 52428796 29822640 22606156 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Image corrections Wed Mar 18 12:39:22 CET 2020 mri_convert --bvec-voxel /project/2419116.01/Data/001//data.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz mri_convert.bin --bvec-voxel /project/2419116.01/Data/001//data.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Data/001//data.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz... cp /project/2419116.01/Data/001//bvecs /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs cp /project/2419116.01/Data/001//bvals /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs.tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals.tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -15.625 mri_convert -oni 128 -onj 128 -onk 64 -oid -0.995933 -0.0884874 0.0169469 -ojd -0.0900097 0.969007 -0.23005 -okd -0.00393486 0.23064 0.973031 -oc 3.38246 -27.6582 0.765499 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz mri_convert.bin -oni 128 -onj 128 -onk 64 -oid -0.995933 -0.0884874 0.0169469 -ojd -0.0900097 0.969007 -0.23005 -okd -0.00393486 0.23064 0.973031 -oc 3.38246 -27.6582 0.765499 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz normalizing out_i_direction: (-0.995933, -0.0884874, 0.0169469) -> (-0.995933, -0.0884874, 0.0169469) normalizing out_j_direction: (-0.0900097, 0.969007, -0.23005) -> (-0.0900097, 0.969007, -0.23005) normalizing out_k_direction: (-0.00393486, 0.23064, 0.973031) -> (-0.00393486, 0.23064, 0.973031) $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz... INFO: found /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvals, copying INFO: found /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.bvecs, converting to LAS mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.bvecs /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.bvals /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig_las.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz ln -sf /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/data.nii.gz mri_convert --frame 0 1 2 3 4 5 6 /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz mri_convert.bin --frame 0 1 2 3 4 5 6 /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) keeping frames 0 1 2 3 4 5 6 writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz... mri_concat --i /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz --mean --o /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 7 Allocing output Done allocing nframes = 7 Computing mean across frames Writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz bet /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff #------------------------------------- #@# Image quality assessment Wed Mar 18 12:39:52 CET 2020 /opt/freesurfer/6.0/bin/dmri_motion --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --T 142.228485 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_motion --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --T 142.228485 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output motion measure file: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_motion.txt Input DWI file: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz Input b-value table: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Low-b image intensity threshold: 142.228 Nominal diffusivity: 0.001 Loading DWI volume series from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_orig.nii.gz Loading b-value table from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Computing within-volume head motion measures Done in 4.147 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Wed Mar 18 12:39:56 CET 2020 mri_convert /project/2419116.01/Freesurfer/001/001/mri/brain.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brain.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brain.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz... orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz... tkregister2 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz --targ /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz --regheader --noedit --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.dat tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl target volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.00000 0.00000 -0.00000 0.00000; 0.00000 0.00000 -1.00000 0.00000; -0.00000 1.00000 -0.00000 1.00006; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664 Log file is /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.log Wed Mar 18 12:40:00 CET 2020 setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts /opt/freesurfer/6.0/bin/bbregister --s 001 --init-fsl --dti --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --fslmat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /opt/freesurfer/6.0 mri_convert /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii mri_convert.bin /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii... fslregister --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --niters 1 --maxangle 90 --tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat.fslregister.log Wed Mar 18 12:40:11 CET 2020 --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --niters 1 --maxangle 90 --tmp /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.40 2016/02/12 21:43:15 zkaufman Exp $ mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /project/2419116.01/scripts mri_convert /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/refvol.fslregister.nii mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/refvol.fslregister.nii... -------------------------------------- /project/2419116.01/scripts mri_convert /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii --frame 0 mri_convert.bin /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii... TR=1000.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.995933, -0.0884874, 0.0169469) j_ras = (-0.0900097, 0.969007, -0.23005) k_ras = (-0.00393486, 0.23064, 0.973031) keeping frame 0 writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii... Mov determinant is -15.625 /project/2419116.01/scripts tkregister2_cmdl --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/reg0.322789.dat --regheader --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat.fsl.mat0 --s 001 --noedit tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/reg0.322789.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99593 0.08849 -0.01695 1.12110; -0.00393 0.23064 0.97303 -28.69337; 0.09001 -0.96901 0.23005 -37.85522; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -15.625, ref det = -1 Wed Mar 18 12:40:16 CET 2020 /project/2419116.01/scripts flirt.fsl -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/refvol.fslregister.nii -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/6.0/bin/fsl.5.0.2.xyztrans.sch -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat.fsl.mat0 Wed Mar 18 12:40:24 CET 2020 /project/2419116.01/scripts flirt.fsl -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/refvol.fslregister.nii -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat.fsl.mat -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/fslregister/fslmat0.trans.mat -schedule /opt/freesurfer/6.0/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s 001 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --fslreg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat.fsl.mat --noedit tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.99544 0.09540 -0.00060 -48.56150; -0.02093 0.21224 -0.97699 142.67500; -0.09307 0.97255 0.21327 -61.59010; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -15.625, ref det = -1 ---- Input registration matrix (computed) -------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Started at Wed Mar 18 12:40:11 CET 2020 Ended at Wed Mar 18 12:40:34 CET 2020 fslregister Done To check results, run: tkregister2 --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --surf orig mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam movvol /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii regfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.init.dat subject 001 dof 6 outregfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1584983001 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.979601 1 -25.0 -25.0 25.0 1.064792 2 -25.0 25.0 -25.0 1.023617 3 -25.0 25.0 25.0 1.039445 4 25.0 -25.0 -25.0 1.052604 5 25.0 -25.0 25.0 1.025284 6 25.0 25.0 -25.0 0.988434 7 25.0 25.0 25.0 1.066169 REL: 8 0.718185 8.239945 1.029993 rel = 0.697271 Initial costs ---------------- Number of surface hits 2674 WM Intensity 412.2845 +/- 153.1570 Ctx Intensity 487.4983 +/- 214.4688 Pct Contrast 13.2012 +/- 37.5274 Cost 0.7182 RelCost 0.6973 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 1.0400 1.0400 0.0 1 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.0000 1.0000 1.0000 0.0 2 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.9301 0.9301 0.0 9 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 -4.0000 0.9293 0.9293 0.0 10 -4.0000 -4.0000 -4.0000 0.0000 -4.0000 0.0000 0.7988 0.7988 0.0 37 -4.0000 -4.0000 0.0000 0.0000 -4.0000 0.0000 0.7298 0.7298 0.0 280 0.0000 -4.0000 0.0000 0.0000 -4.0000 0.0000 0.7020 0.7020 0.0 283 0.0000 -4.0000 0.0000 0.0000 0.0000 0.0000 0.3177 0.3177 0.0 Brute Force -------------------------- Min cost was 0.317730 Number of iterations 729 Search time 1.232000 sec Parameters at best (transmm, rotdeg) 0.000 -4.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 -4 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.317730 7 -0.147 -4.000 0.000 0.000 0.000 0.000 0.3109168384 9 -0.165 -4.000 0.000 0.000 0.000 0.000 0.3108730396 10 -0.161 -4.000 0.000 0.000 0.000 0.000 0.3108462406 11 -0.157 -4.000 0.000 0.000 0.000 0.000 0.3108361629 12 -0.156 -4.000 0.000 0.000 0.000 0.000 0.3108361615 15 -0.156 -3.000 0.000 0.000 0.000 0.000 0.2747553450 20 -0.156 -3.135 0.000 0.000 0.000 0.000 0.2736968873 23 -0.156 -3.130 0.000 0.000 0.000 0.000 0.2736852405 25 -0.156 -3.129 0.000 0.000 0.000 0.000 0.2736836680 26 -0.156 -3.128 0.000 0.000 0.000 0.000 0.2736822452 28 -0.156 -3.128 1.000 0.000 0.000 0.000 0.2411502691 34 -0.156 -3.128 1.236 0.000 0.000 0.000 0.2410086978 35 -0.156 -3.128 1.131 0.000 0.000 0.000 0.2401234522 36 -0.156 -3.128 1.122 0.000 0.000 0.000 0.2401075765 39 -0.156 -3.128 1.121 0.000 0.000 0.000 0.2401073501 47 -0.156 -3.128 1.121 0.382 0.000 0.000 0.2251100830 48 -0.156 -3.128 1.121 0.394 0.000 0.000 0.2250570113 50 -0.156 -3.128 1.121 0.401 0.000 0.000 0.2250390930 51 -0.156 -3.128 1.121 0.402 0.000 0.000 0.2250388076 58 -0.156 -3.128 1.121 0.402 0.382 0.000 0.2176219625 59 -0.156 -3.128 1.121 0.402 0.293 0.000 0.2171584354 60 -0.156 -3.128 1.121 0.402 0.306 0.000 0.2167795108 61 -0.156 -3.128 1.121 0.402 0.331 0.000 0.2159457896 63 -0.156 -3.128 1.121 0.402 0.337 0.000 0.2158966699 73 -0.156 -3.128 1.121 0.402 0.337 -0.016 0.2158349380 76 -0.156 -3.128 1.121 0.402 0.337 -0.050 0.2157063079 78 -0.156 -3.128 1.121 0.402 0.337 -0.037 0.2157058181 79 -0.156 -3.128 1.121 0.402 0.337 -0.043 0.2156941215 powell nthiter 1: fret = 0.215694 95 -0.154 -3.128 1.121 0.402 0.337 -0.043 0.2156914255 102 -0.154 -3.746 1.121 0.402 0.337 -0.043 0.2147455923 104 -0.154 -3.447 1.121 0.402 0.337 -0.043 0.2051644161 106 -0.154 -3.530 1.121 0.402 0.337 -0.043 0.2038670439 108 -0.154 -3.529 1.121 0.402 0.337 -0.043 0.2038447022 110 -0.154 -3.515 1.121 0.402 0.337 -0.043 0.2038019614 111 -0.154 -3.521 1.121 0.402 0.337 -0.043 0.2037805596 118 -0.154 -3.521 0.503 0.402 0.337 -0.043 0.2007675429 120 -0.154 -3.521 0.734 0.402 0.337 -0.043 0.1969452605 122 -0.154 -3.521 0.731 0.402 0.337 -0.043 0.1969442132 123 -0.154 -3.521 0.729 0.402 0.337 -0.043 0.1969429868 128 -0.154 -3.521 0.728 0.402 0.337 -0.043 0.1969425190 135 -0.154 -3.521 0.728 0.784 0.337 -0.043 0.1897183275 138 -0.154 -3.521 0.728 0.874 0.337 -0.043 0.1892868810 141 -0.154 -3.521 0.728 0.887 0.337 -0.043 0.1892654651 142 -0.154 -3.521 0.728 0.884 0.337 -0.043 0.1892570950 143 -0.154 -3.521 0.728 0.882 0.337 -0.043 0.1892550911 151 -0.154 -3.521 0.728 0.882 0.335 -0.043 0.1892395502 152 -0.154 -3.521 0.728 0.882 0.294 -0.043 0.1882511019 158 -0.154 -3.521 0.728 0.882 0.299 -0.043 0.1881927905 172 -0.154 -3.521 0.728 0.882 0.299 -0.054 0.1881206478 powell nthiter 2: fret = 0.188121 182 -0.131 -3.521 0.728 0.882 0.299 -0.054 0.1880463504 184 -0.138 -3.521 0.728 0.882 0.299 -0.054 0.1880199911 186 -0.140 -3.521 0.728 0.882 0.299 -0.054 0.1880191062 194 -0.140 -3.749 0.728 0.882 0.299 -0.054 0.1852342411 195 -0.140 -3.734 0.728 0.882 0.299 -0.054 0.1850390578 197 -0.140 -3.729 0.728 0.882 0.299 -0.054 0.1849813466 198 -0.140 -3.712 0.728 0.882 0.299 -0.054 0.1848914570 200 -0.140 -3.714 0.728 0.882 0.299 -0.054 0.1848898401 209 -0.140 -3.714 0.596 0.882 0.299 -0.054 0.1848315819 210 -0.140 -3.714 0.655 0.882 0.299 -0.054 0.1841528300 211 -0.140 -3.714 0.661 0.882 0.299 -0.054 0.1841156359 213 -0.140 -3.714 0.669 0.882 0.299 -0.054 0.1840917614 223 -0.140 -3.714 0.669 0.884 0.299 -0.054 0.1840180532 224 -0.140 -3.714 0.669 0.901 0.299 -0.054 0.1836602716 226 -0.140 -3.714 0.669 0.902 0.299 -0.054 0.1836468508 235 -0.140 -3.714 0.669 0.902 0.314 -0.054 0.1834408531 236 -0.140 -3.714 0.669 0.902 0.350 -0.054 0.1830913683 239 -0.140 -3.714 0.669 0.902 0.351 -0.054 0.1830910734 247 -0.140 -3.714 0.669 0.902 0.351 0.059 0.1828978158 252 -0.140 -3.714 0.669 0.902 0.351 0.044 0.1828145614 255 -0.140 -3.714 0.669 0.902 0.351 0.041 0.1827968811 258 -0.140 -3.714 0.669 0.902 0.351 0.040 0.1827916547 powell nthiter 3: fret = 0.182792 267 -0.132 -3.714 0.669 0.902 0.351 0.040 0.1827584522 268 -0.118 -3.714 0.669 0.902 0.351 0.040 0.1827256861 271 -0.119 -3.714 0.669 0.902 0.351 0.040 0.1827255735 279 -0.119 -3.755 0.669 0.902 0.351 0.040 0.1827182325 280 -0.119 -3.736 0.669 0.902 0.351 0.040 0.1825840862 282 -0.119 -3.739 0.669 0.902 0.351 0.040 0.1825759714 293 -0.119 -3.739 0.571 0.902 0.351 0.040 0.1814756558 295 -0.119 -3.739 0.563 0.902 0.351 0.040 0.1813961901 296 -0.119 -3.739 0.542 0.902 0.351 0.040 0.1813407111 299 -0.119 -3.739 0.543 0.902 0.351 0.040 0.1813405946 310 -0.119 -3.739 0.543 0.906 0.351 0.040 0.1813330977 311 -0.119 -3.739 0.543 0.905 0.351 0.040 0.1813329617 321 -0.119 -3.739 0.543 0.905 0.352 0.040 0.1813311801 322 -0.119 -3.739 0.543 0.905 0.354 0.040 0.1813305576 333 -0.119 -3.739 0.543 0.905 0.354 0.036 0.1813273803 powell nthiter 4: fret = 0.181327 345 -0.145 -3.739 0.543 0.905 0.354 0.036 0.1810916244 347 -0.151 -3.739 0.543 0.905 0.354 0.036 0.1810788656 358 -0.151 -3.750 0.543 0.905 0.354 0.036 0.1810290797 360 -0.151 -3.749 0.543 0.905 0.354 0.036 0.1810286685 371 -0.151 -3.749 0.551 0.905 0.354 0.036 0.1810046038 372 -0.151 -3.749 0.554 0.905 0.354 0.036 0.1810009779 373 -0.151 -3.749 0.557 0.905 0.354 0.036 0.1809992338 386 -0.151 -3.749 0.557 0.911 0.354 0.036 0.1809600167 388 -0.151 -3.749 0.557 0.910 0.354 0.036 0.1809573754 399 -0.151 -3.749 0.557 0.910 0.348 0.036 0.1809332975 411 -0.151 -3.749 0.557 0.910 0.348 0.049 0.1809065771 412 -0.151 -3.749 0.557 0.910 0.348 0.045 0.1809021945 421 -0.163 -3.752 0.562 0.912 0.346 0.049 0.1808645511 422 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808642451 423 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808642008 426 -0.162 -3.752 0.562 0.912 0.346 0.048 0.1808641950 427 -0.162 -3.752 0.562 0.912 0.346 0.049 0.1808639642 powell nthiter 5: fret = 0.180864 441 -0.162 -3.752 0.562 0.912 0.346 0.047 0.1808635502 450 -0.162 -3.760 0.562 0.912 0.346 0.047 0.1808087628 451 -0.162 -3.764 0.562 0.912 0.346 0.047 0.1808047319 452 -0.162 -3.763 0.562 0.912 0.346 0.047 0.1808046958 461 -0.162 -3.763 0.560 0.912 0.346 0.047 0.1807954288 462 -0.162 -3.763 0.544 0.912 0.346 0.047 0.1807475015 464 -0.162 -3.763 0.546 0.912 0.346 0.047 0.1807452624 465 -0.162 -3.763 0.549 0.912 0.346 0.047 0.1807435887 478 -0.162 -3.763 0.549 0.917 0.346 0.047 0.1807133913 479 -0.162 -3.763 0.549 0.916 0.346 0.047 0.1807087687 480 -0.162 -3.763 0.549 0.915 0.346 0.047 0.1807051087 491 -0.162 -3.763 0.549 0.915 0.340 0.047 0.1806558301 492 -0.162 -3.763 0.549 0.915 0.339 0.047 0.1806550116 499 -0.174 -3.767 0.555 0.917 0.336 0.051 0.1806036106 504 -0.174 -3.767 0.555 0.917 0.336 0.051 0.1806036075 506 -0.197 -3.785 0.552 0.925 0.325 0.056 0.1804484577 513 -0.200 -3.787 0.552 0.926 0.323 0.057 0.1804451911 514 -0.201 -3.787 0.552 0.926 0.323 0.057 0.1804446728 517 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804446691 520 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804444539 521 -0.201 -3.788 0.552 0.926 0.323 0.057 0.1804444492 powell nthiter 6: fret = 0.180444 533 -0.201 -3.788 0.552 0.926 0.323 0.093 0.1804008376 534 -0.201 -3.788 0.552 0.926 0.323 0.078 0.1803661935 535 -0.201 -3.788 0.552 0.926 0.323 0.079 0.1803661169 543 -0.201 -3.801 0.552 0.926 0.323 0.079 0.1802962611 545 -0.201 -3.800 0.552 0.926 0.323 0.079 0.1802962201 551 -0.181 -3.794 0.543 0.923 0.326 0.073 0.1802897511 553 -0.191 -3.796 0.547 0.924 0.324 0.076 0.1802781763 554 -0.190 -3.796 0.547 0.924 0.324 0.076 0.1802781688 557 -0.189 -3.796 0.546 0.924 0.325 0.075 0.1802779359 560 -0.190 -3.796 0.547 0.924 0.325 0.076 0.1802776988 562 -0.189 -3.796 0.547 0.924 0.325 0.076 0.1802775938 563 -0.189 -3.796 0.547 0.924 0.325 0.076 0.1802773118 587 -0.189 -3.796 0.547 0.924 0.321 0.076 0.1802645678 589 -0.189 -3.796 0.547 0.924 0.319 0.076 0.1802626097 590 -0.189 -3.796 0.547 0.924 0.318 0.076 0.1802624062 593 -0.213 -3.814 0.544 0.932 0.306 0.081 0.1801486433 598 -0.217 -3.817 0.544 0.933 0.304 0.082 0.1801472000 powell nthiter 7: fret = 0.180147 615 -0.217 -3.817 0.544 0.933 0.304 0.085 0.1800995680 618 -0.217 -3.817 0.544 0.933 0.304 0.102 0.1799286454 620 -0.217 -3.817 0.544 0.933 0.304 0.106 0.1799135263 622 -0.217 -3.817 0.544 0.933 0.304 0.108 0.1799105046 623 -0.217 -3.817 0.544 0.933 0.304 0.109 0.1799104530 639 -0.211 -3.815 0.541 0.932 0.305 0.107 0.1799033968 640 -0.212 -3.816 0.542 0.932 0.305 0.107 0.1799027017 644 -0.212 -3.816 0.542 0.932 0.305 0.107 0.1799026394 658 -0.212 -3.816 0.542 0.925 0.305 0.107 0.1798667123 659 -0.212 -3.816 0.542 0.927 0.305 0.107 0.1798631920 668 -0.212 -3.816 0.542 0.927 0.302 0.107 0.1798570223 670 -0.212 -3.816 0.542 0.927 0.301 0.107 0.1798570206 677 -0.221 -3.822 0.541 0.930 0.297 0.109 0.1798299821 678 -0.220 -3.822 0.541 0.930 0.297 0.109 0.1798290986 679 -0.219 -3.821 0.541 0.929 0.298 0.109 0.1798273239 682 -0.219 -3.821 0.541 0.929 0.298 0.109 0.1798269987 powell nthiter 8: fret = 0.179827 697 -0.219 -3.821 0.541 0.929 0.298 0.112 0.1798266612 699 -0.219 -3.821 0.541 0.929 0.298 0.111 0.1798259710 706 -0.219 -3.819 0.541 0.929 0.298 0.111 0.1798101428 709 -0.219 -3.815 0.541 0.929 0.298 0.111 0.1797907963 718 -0.216 -3.814 0.540 0.929 0.298 0.110 0.1797861106 720 -0.215 -3.813 0.539 0.929 0.299 0.110 0.1797854987 723 -0.215 -3.813 0.539 0.929 0.299 0.110 0.1797854946 725 -0.214 -3.813 0.539 0.929 0.299 0.110 0.1797854619 726 -0.214 -3.813 0.539 0.929 0.299 0.110 0.1797852822 739 -0.214 -3.813 0.539 0.924 0.299 0.110 0.1797651670 758 -0.223 -3.820 0.538 0.927 0.294 0.112 0.1797433842 759 -0.222 -3.819 0.538 0.926 0.295 0.111 0.1797426966 762 -0.222 -3.819 0.538 0.926 0.295 0.111 0.1797426029 766 -0.226 -3.818 0.536 0.923 0.291 0.114 0.1796854483 769 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796078697 774 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796074948 780 -0.232 -3.815 0.531 0.918 0.286 0.118 0.1796074695 powell nthiter 9: fret = 0.179607 790 -0.232 -3.815 0.531 0.918 0.286 0.114 0.1795973934 799 -0.235 -3.817 0.531 0.919 0.284 0.115 0.1795863357 800 -0.236 -3.818 0.531 0.919 0.284 0.115 0.1795855418 814 -0.235 -3.818 0.530 0.919 0.284 0.115 0.1795840294 819 -0.235 -3.818 0.530 0.919 0.284 0.115 0.1795839802 830 -0.235 -3.818 0.530 0.926 0.284 0.115 0.1794771969 832 -0.235 -3.818 0.530 0.927 0.284 0.115 0.1794752390 843 -0.235 -3.818 0.530 0.927 0.283 0.115 0.1794737159 846 -0.239 -3.816 0.528 0.924 0.280 0.117 0.1794179234 849 -0.241 -3.815 0.526 0.922 0.278 0.119 0.1794132380 851 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794130525 856 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794129969 858 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794129383 861 -0.240 -3.815 0.526 0.923 0.278 0.118 0.1794128305 powell nthiter 10: fret = 0.179413 872 -0.240 -3.815 0.526 0.923 0.278 0.115 0.1794071401 896 -0.239 -3.815 0.526 0.923 0.278 0.115 0.1794064570 901 -0.239 -3.815 0.526 0.923 0.278 0.115 0.1794063888 912 -0.239 -3.815 0.526 0.925 0.278 0.115 0.1793870218 913 -0.239 -3.815 0.526 0.926 0.278 0.115 0.1793834371 924 -0.239 -3.815 0.526 0.926 0.279 0.115 0.1793820738 927 -0.243 -3.813 0.523 0.923 0.276 0.117 0.1793695776 931 -0.242 -3.814 0.524 0.924 0.277 0.116 0.1793685150 932 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793681508 933 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793680899 935 -0.242 -3.814 0.524 0.924 0.277 0.117 0.1793677663 940 -0.244 -3.812 0.522 0.925 0.276 0.115 0.1793437051 945 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793398172 947 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793395766 953 -0.245 -3.811 0.520 0.926 0.275 0.114 0.1793395602 powell nthiter 11: fret = 0.179340 976 -0.246 -3.813 0.520 0.926 0.274 0.115 0.1793368355 977 -0.247 -3.813 0.520 0.926 0.274 0.115 0.1793367208 980 -0.247 -3.813 0.520 0.926 0.274 0.115 0.1793363658 989 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793326470 990 -0.245 -3.812 0.519 0.926 0.274 0.114 0.1793325115 991 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793324952 992 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793324733 994 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793323323 995 -0.244 -3.812 0.519 0.926 0.274 0.114 0.1793323060 1002 -0.245 -3.812 0.519 0.925 0.274 0.114 0.1793316234 1019 -0.245 -3.812 0.519 0.925 0.275 0.114 0.1793306092 1027 -0.245 -3.812 0.518 0.926 0.275 0.114 0.1793302638 1035 -0.245 -3.812 0.518 0.926 0.275 0.114 0.1793302247 Powell done niters = 11 Computing relative cost 0 -25.0 -25.0 -25.0 1.035876 1 -25.0 -25.0 25.0 1.005432 2 -25.0 25.0 -25.0 0.994174 3 -25.0 25.0 25.0 1.033495 4 25.0 -25.0 -25.0 1.022629 5 25.0 -25.0 25.0 1.042502 6 25.0 25.0 -25.0 1.039259 7 25.0 25.0 25.0 0.996001 REL: 8 0.179330 8.169368 1.021171 rel = 0.175612 Number of iterations 11 Min cost was 0.179330 Number of FunctionCalls 1036 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 1.751000 sec Parameters at optimum (transmm) -0.24505 -3.81180 0.51850 Parameters at optimum (rotdeg) 0.92559 0.27477 0.11420 Final costs ---------------- Number of surface hits 2673 WM Intensity 321.0697 +/- 87.9017 Ctx Intensity 450.2344 +/- 126.9143 Pct Contrast 31.5471 +/- 28.6048 Cost 0.1793 RelCost 0.6973 Reg at min cost was 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat, type = 14 Original Reg 0.99544 0.09307 -0.02093 1.58228; 0.00060 0.21326 0.97699 -25.33590; 0.09540 -0.97255 0.21224 -38.11465; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00045 0.00510 0.00085 0.38053; -0.00044 -0.01586 0.00360 3.18996; 0.00478 -0.00314 -0.01585 -0.10706; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 3.383639 Computing change in rh position Surface-RMS-Diff-mm 3.302913 0.547229 4.302054 mri_segreg done mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /project/2419116.01/Freesurfer/001 cd /project/2419116.01/scripts mri_segreg --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii --init-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat --out-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam movvol /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/template.nii regfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/tmp.bbregister.322664/bbr.pass1.dat subject 001 dof 6 outregfile /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1584935070 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 1.007960 1 -25.0 -25.0 25.0 1.011953 2 -25.0 25.0 -25.0 1.009494 3 -25.0 25.0 25.0 1.027691 4 25.0 -25.0 -25.0 1.023954 5 25.0 -25.0 25.0 1.030451 6 25.0 25.0 -25.0 1.023579 7 25.0 25.0 25.0 1.042015 REL: 8 0.191128 8.177096 1.022137 rel = 0.186988 Initial costs ---------------- Number of surface hits 267581 WM Intensity 320.9112 +/- 89.2211 Ctx Intensity 450.5283 +/- 127.3895 Pct Contrast 31.8042 +/- 28.0143 Cost 0.1911 RelCost 0.1870 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.1912 0.1912 0.0 1 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.0000 0.1911 0.1911 0.0 9 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 0.1892 0.1892 0.0 10 -0.1000 -0.1000 -0.1000 0.0000 -0.1000 0.0000 0.1865 0.1865 0.0 18 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1852 0.1852 0.0 19 -0.1000 -0.1000 -0.1000 0.1000 -0.1000 0.0000 0.1851 0.1851 0.0 21 -0.1000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1836 0.1836 0.0 73 -0.1000 -0.1000 0.1000 0.1000 -0.1000 0.0000 0.1835 0.1835 0.0 118 -0.1000 0.0000 0.0000 0.0000 -0.1000 0.0000 0.1833 0.1833 0.0 261 0.0000 -0.1000 -0.1000 0.1000 -0.1000 -0.1000 0.1832 0.1832 0.0 264 0.0000 -0.1000 -0.1000 0.1000 0.0000 -0.1000 0.1816 0.1816 0.0 267 0.0000 -0.1000 -0.1000 0.1000 0.1000 -0.1000 0.1798 0.1798 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.1793 0.1793 0.0 Brute Force -------------------------- Min cost was 0.179330 Number of iterations 729 Search time 1.195000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.191128 7 0.173 0.000 0.000 0.000 0.000 0.000 0.1886514903 16 0.173 0.071 0.000 0.000 0.000 0.000 0.1882374668 18 0.173 0.066 0.000 0.000 0.000 0.000 0.1882277018 20 0.173 0.056 0.000 0.000 0.000 0.000 0.1882225638 31 0.173 0.056 -0.030 0.000 0.000 0.000 0.1881545961 33 0.173 0.056 -0.035 0.000 0.000 0.000 0.1881530728 35 0.173 0.056 -0.036 0.000 0.000 0.000 0.1881530598 44 0.173 0.056 -0.036 0.054 0.000 0.000 0.1881276209 45 0.173 0.056 -0.036 0.030 0.000 0.000 0.1880834796 46 0.173 0.056 -0.036 0.029 0.000 0.000 0.1880833573 54 0.173 0.056 -0.036 0.029 0.045 0.000 0.1877354351 56 0.173 0.056 -0.036 0.029 0.047 0.000 0.1877348212 57 0.173 0.056 -0.036 0.029 0.048 0.000 0.1877347659 65 0.173 0.056 -0.036 0.029 0.048 -0.112 0.1870888226 66 0.173 0.056 -0.036 0.029 0.048 -0.105 0.1870691076 67 0.173 0.056 -0.036 0.029 0.048 -0.092 0.1870392112 70 0.173 0.056 -0.036 0.029 0.048 -0.089 0.1870372263 71 0.173 0.056 -0.036 0.029 0.048 -0.088 0.1870369856 powell nthiter 1: fret = 0.187037 82 0.172 0.056 -0.036 0.029 0.048 -0.088 0.1870368908 90 0.172 0.052 -0.036 0.029 0.048 -0.088 0.1870344850 99 0.172 0.052 -0.037 0.029 0.048 -0.088 0.1870343496 100 0.172 0.052 -0.038 0.029 0.048 -0.088 0.1870342890 102 0.172 0.052 -0.039 0.029 0.048 -0.088 0.1870342842 103 0.172 0.052 -0.040 0.029 0.048 -0.088 0.1870275806 116 0.172 0.052 -0.040 0.061 0.048 -0.088 0.1870159803 117 0.172 0.052 -0.040 0.047 0.048 -0.088 0.1869907265 126 0.172 0.052 -0.040 0.047 0.071 -0.088 0.1868993274 127 0.172 0.052 -0.040 0.047 0.078 -0.088 0.1868986579 128 0.172 0.052 -0.040 0.047 0.075 -0.088 0.1868984994 137 0.172 0.052 -0.040 0.047 0.076 -0.135 0.1868847482 138 0.172 0.052 -0.040 0.047 0.076 -0.114 0.1868528894 139 0.172 0.052 -0.040 0.047 0.076 -0.113 0.1868522283 141 0.172 0.052 -0.040 0.047 0.076 -0.110 0.1868514123 144 0.171 0.048 -0.044 0.066 0.104 -0.131 0.1867935937 151 0.171 0.047 -0.045 0.068 0.108 -0.134 0.1867932783 152 0.171 0.048 -0.045 0.067 0.107 -0.133 0.1867931273 158 0.171 0.048 -0.045 0.067 0.107 -0.133 0.1867931121 powell nthiter 2: fret = 0.186793 166 0.216 0.048 -0.045 0.067 0.106 -0.133 0.1867091783 167 0.206 0.048 -0.045 0.067 0.106 -0.133 0.1867048592 168 0.208 0.048 -0.045 0.067 0.106 -0.133 0.1867048430 176 0.208 0.031 -0.045 0.067 0.106 -0.133 0.1866684198 177 0.208 0.024 -0.045 0.067 0.106 -0.133 0.1866680036 178 0.208 0.027 -0.045 0.067 0.106 -0.133 0.1866674808 179 0.208 0.026 -0.045 0.067 0.106 -0.133 0.1866674677 187 0.208 0.026 -0.047 0.067 0.106 -0.133 0.1866644753 188 0.208 0.026 -0.062 0.067 0.106 -0.133 0.1866525584 190 0.208 0.026 -0.069 0.067 0.106 -0.133 0.1866519888 191 0.208 0.026 -0.066 0.067 0.106 -0.133 0.1866519141 192 0.208 0.026 -0.065 0.067 0.106 -0.133 0.1866519039 200 0.208 0.026 -0.065 0.086 0.106 -0.133 0.1866421668 203 0.208 0.026 -0.065 0.085 0.106 -0.133 0.1866419812 212 0.208 0.026 -0.065 0.085 0.106 -0.121 0.1866216573 216 0.208 0.026 -0.065 0.085 0.106 -0.114 0.1866134320 217 0.208 0.026 -0.065 0.085 0.106 -0.112 0.1866128490 219 0.208 0.026 -0.065 0.085 0.106 -0.111 0.1866126587 221 0.207 0.022 -0.069 0.103 0.135 -0.133 0.1866009989 225 0.207 0.023 -0.068 0.096 0.124 -0.125 0.1865902882 227 0.207 0.023 -0.068 0.097 0.125 -0.126 0.1865899166 231 0.207 0.023 -0.068 0.097 0.126 -0.126 0.1865898864 powell nthiter 3: fret = 0.186590 244 0.208 0.023 -0.068 0.097 0.126 -0.126 0.1865896994 262 0.208 0.023 -0.089 0.097 0.126 -0.126 0.1865673183 265 0.208 0.023 -0.087 0.097 0.126 -0.126 0.1865669864 266 0.208 0.023 -0.086 0.097 0.126 -0.126 0.1865668858 268 0.208 0.023 -0.084 0.097 0.126 -0.126 0.1865667004 276 0.208 0.023 -0.084 0.093 0.126 -0.126 0.1865633299 278 0.208 0.023 -0.084 0.092 0.126 -0.126 0.1865630426 287 0.208 0.023 -0.084 0.092 0.126 -0.114 0.1865480564 290 0.208 0.023 -0.084 0.092 0.126 -0.113 0.1865479825 298 0.208 0.023 -0.085 0.094 0.129 -0.116 0.1865462250 299 0.208 0.023 -0.085 0.094 0.129 -0.116 0.1865462008 300 0.208 0.023 -0.085 0.094 0.130 -0.116 0.1865461887 301 0.208 0.023 -0.085 0.094 0.130 -0.116 0.1865461738 304 0.208 0.022 -0.085 0.095 0.130 -0.117 0.1865461735 305 0.208 0.023 -0.085 0.094 0.130 -0.117 0.1865461482 306 0.208 0.023 -0.085 0.094 0.130 -0.117 0.1865461069 307 0.208 0.023 -0.085 0.095 0.130 -0.117 0.1865461006 powell nthiter 4: fret = 0.186546 318 0.215 0.023 -0.085 0.095 0.130 -0.117 0.1865421494 319 0.216 0.023 -0.085 0.095 0.130 -0.117 0.1865420444 339 0.216 0.023 -0.089 0.095 0.130 -0.117 0.1865412955 348 0.216 0.023 -0.089 0.093 0.130 -0.117 0.1865405547 350 0.216 0.023 -0.089 0.092 0.130 -0.117 0.1865402844 359 0.216 0.023 -0.089 0.092 0.130 -0.113 0.1865392983 367 0.216 0.021 -0.090 0.099 0.141 -0.122 0.1865376231 371 0.216 0.021 -0.090 0.098 0.139 -0.120 0.1865350774 372 0.216 0.021 -0.090 0.098 0.139 -0.120 0.1865347226 373 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865335918 378 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865335251 379 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865334420 380 0.216 0.021 -0.090 0.097 0.138 -0.119 0.1865334288 381 0.223 0.020 -0.094 0.100 0.146 -0.122 0.1865326238 powell nthiter 5: fret = 0.186533 389 0.218 0.021 -0.090 0.097 0.138 -0.119 0.1865323743 401 0.218 0.022 -0.090 0.097 0.138 -0.119 0.1865322488 411 0.218 0.022 -0.095 0.097 0.138 -0.119 0.1865268393 416 0.218 0.022 -0.094 0.097 0.138 -0.119 0.1865263886 424 0.218 0.022 -0.094 0.095 0.138 -0.119 0.1865256887 434 0.218 0.022 -0.094 0.095 0.138 -0.115 0.1865254509 435 0.218 0.022 -0.094 0.095 0.138 -0.117 0.1865249666 443 0.218 0.022 -0.094 0.094 0.137 -0.116 0.1865249137 445 0.218 0.022 -0.094 0.094 0.137 -0.116 0.1865248935 powell nthiter 6: fret = 0.186525 Powell done niters = 6 Computing relative cost 0 -25.0 -25.0 -25.0 1.009414 1 -25.0 -25.0 25.0 1.011922 2 -25.0 25.0 -25.0 1.007060 3 -25.0 25.0 25.0 1.028050 4 25.0 -25.0 -25.0 1.025711 5 25.0 -25.0 25.0 1.030716 6 25.0 25.0 -25.0 1.022463 7 25.0 25.0 25.0 1.040151 REL: 8 0.186525 8.175486 1.021936 rel = 0.182521 Number of iterations 6 Min cost was 0.186525 Number of FunctionCalls 512 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 53.038000 sec Parameters at optimum (transmm) 0.21825 0.02242 -0.09360 Parameters at optimum (rotdeg) 0.09440 0.13759 -0.11652 Final costs ---------------- Number of surface hits 267577 WM Intensity 320.8239 +/- 89.1866 Ctx Intensity 451.6115 +/- 127.2807 Pct Contrast 32.1302 +/- 27.5993 Cost 0.1865 RelCost 0.1870 Reg at min cost was 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.99589 0.08797 -0.02178 1.20175; 0.00105 0.22912 0.97340 -28.52586; 0.09062 -0.96941 0.22809 -38.00760; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00021 0.00186 -0.00253 -0.06898; 0.00218 -0.00142 0.00034 -0.08288; 0.00239 -0.00017 -0.00166 0.14333; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.233227 Computing change in rh position Surface-RMS-Diff-mm 0.238095 0.038914 0.331692 mri_segreg done MinCost: 0.186525 320.823876 451.611458 32.130236 tkregister2_cmdl --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /opt/freesurfer/6.0/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz reg file /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; float2int = 0 --------------------------------------- INFO: loading target /project/2419116.01/Freesurfer/001/001/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Tmov: -------------------- -2.50000 0.00000 0.00000 159.99998; 0.00000 0.00000 2.50000 -79.99998; 0.00000 -2.50000 0.00000 160.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = 001 RegMat --------------------------- 0.99610 0.08611 -0.01925 1.27072; -0.00113 0.23055 0.97306 -28.44298; 0.08823 -0.96924 0.22974 -38.15092; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -15.625, ref det = -1 Cleaning up Started at Wed Mar 18 12:40:00 CET 2020 Ended at Wed Mar 18 12:41:53 CET 2020 BBR-Run-Time-Sec 112 bbregister Done To check results, run: tkregisterfv --mov /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.dat --surfs convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2diff.bbr.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2anatorig.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anat.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Wed Mar 18 12:41:53 CET 2020 flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_mni.nii.gz -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2anat.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2mni.mat -concat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2anat.mat convert_xfm -omat /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2anatorig.mat -inverse /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Wed Mar 18 12:49:29 CET 2020 mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 481098 values in range Counting number of voxels in first frame Found 481098 voxels in final mask Count: 481098 481098.000000 16777216 2.867568 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 507046 values in range Counting number of voxels in first frame Found 507046 voxels in final mask Count: 507046 507046.000000 16777216 3.022230 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 59593 values in range Counting number of voxels in first frame Found 59593 voxels in final mask Count: 59593 59593.000000 16777216 0.355202 mri_binarize done mri_aparc2aseg --s 001 --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /project/2419116.01/Freesurfer/001 subject 001 outvol /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /project/2419116.01/Freesurfer/001/001/surf/lh.white Reading lh pial surface /project/2419116.01/Freesurfer/001/001/surf/lh.pial Loading lh annotations from /project/2419116.01/Freesurfer/001/001/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /project/2419116.01/Freesurfer/001/001/surf/rh.white Reading rh pial surface /project/2419116.01/Freesurfer/001/001/surf/rh.pial Loading rh annotations from /project/2419116.01/Freesurfer/001/001/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /project/2419116.01/Freesurfer/001/001/mri/ribbon.mgz Loading filled from /project/2419116.01/Freesurfer/001/001/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /project/2419116.01/Freesurfer/001/001/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 838887 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 5 clusters 0 k 1.000000 1 k 891.000000 2 k 1.000000 3 k 7.000000 4 k 1.000000 Fixing Parahip RH WM Found 2 clusters 0 k 1.000000 1 k 975.000000 Writing output aseg to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 384626 values in range Counting number of voxels in first frame Found 384626 voxels in final mask Count: 384626 384626.000000 16777216 2.292550 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 672012 values in range Counting number of voxels in first frame Found 672012 voxels in final mask Count: 672012 672012.000000 16777216 4.005504 mri_binarize done mri_binarize --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /project/2419116.01/scripts cmdline mri_binarize.bin --i /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz --match 16 --o /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam input /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 18452 values in range Counting number of voxels in first frame Found 18452 voxels in final mask Count: 18452 18452.000000 16777216 0.109982 mri_binarize done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz -add /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/Brain-Stem.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/brainmask.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz -mul /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz mri_convert.bin /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/001/mri/aparc+aseg.mgz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/White-Matter.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/White-Matter++.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/White-Matter++.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/White-Matter++.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/notventricles.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/notventricles.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/notventricles.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/cortex+2mm+bs.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/cortex+2mm+bs.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg+2mm.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/aparc+aseg_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 2.08456e-09 1.86265e-09 -ojd -4.63842e-10 1 0 -okd 0 0 1 -oc 1.20459 2.50511 -34.8816 -rt nearest /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/anat_brain_mask-vent.nii.gz... TR=2250.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 2.08456e-09, 1.86265e-09) j_ras = (0, 0, -1) k_ras = (-4.63842e-10, 1, 0) Reslicing using nearest writing to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz... flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/lowb.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz -k /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi_snr.txt flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lowb_brain_mask.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lowb_brain_mask.nii.gz -ref /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/brain_anat_orig.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Wed Mar 18 12:55:00 CET 2020 dtifit -k /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz -m /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs -b /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals -o /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit 0 128 0 128 0 64 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L1.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L2.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_L3.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_MD.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_MO.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat flirt -in /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_S0.nii.gz -ref /opt/fsl/6.0.1/data/standard/MNI152_T1_1mm_brain.nii.gz -out /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Wed Mar 18 12:55:21 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.001.322237.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.001.322237.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.322237.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 1700 streamlines for straying off mask INFO: Rejected 49 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 6666 total streamlines (min/mean/max length: 59/95/131) Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 4266 non-truncated streamlines (min/mean/max length: 59/96/131) INFO: Center of mass of start points: (98+/-3, 98+/-6, 42+/-9) INFO: Center of mass of midpoints: (112+/-2, 110+/-4, 79+/-5) INFO: Center of mass of end points: (112+/-8, 106+/-9, 141+/-6) INFO: Split streamlines into 27 segments Computing path histograms INFO: Total streamline volume is 34695 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 101 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0303498 INFO: Points where local peeks in curvature occur are 100 104 54 (curv = 0.0660258) 108 110 67 (curv = 0.0408704) 110 110 71 (curv = 0.0407246) 112 111 78 (curv = 0.0378013) 113 110 83 (curv = 0.0306361) 113 110 91 (curv = 0.0307648) 115 109 104 (curv = 0.040742) 114 108 110 (curv = 0.0457882) 113 104 119 (curv = 0.0415046) 111 104 126 (curv = 0.0416192) INFO: Intermediate dominant points are 100 99 36 100 104 54 108 110 67 114 108 110 111 104 126 113 104 142 INFO: Final dominant points are 100 99 36 100 104 54 108 110 67 114 108 110 111 104 126 113 104 142 INFO: Selected control points are 100 99 36 100 105 55 109 110 68 115 108 108 111 104 125 113 104 142 INFO: Distances between consecutive points are 20 17 40 18 17 INFO: Selected control points in test subject's space are 67 86 17 67 85 24 71 85 29 73 79 41 72 75 46 73 72 51 INFO: Distances between consecutive points in test subject's space are 7 6 14 6 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 52.433 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 1798 streamlines for straying off mask INFO: Rejected 59 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 7439 total streamlines (min/mean/max length: 46/96/137) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4864 non-truncated streamlines (min/mean/max length: 53/96/132) INFO: Center of mass of start points: (81+/-3, 97+/-6, 42+/-12) INFO: Center of mass of midpoints: (67+/-3, 110+/-4, 80+/-7) INFO: Center of mass of end points: (68+/-7, 105+/-11, 141+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 41518 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.032375 INFO: Points where local peeks in curvature occur are 78 100 59 (curv = 0.046936) 72 108 69 (curv = 0.0645512) 63 109 103 (curv = 0.0604903) 65 104 116 (curv = 0.0698425) 66 104 128 (curv = 0.049079) INFO: Intermediate dominant points are 81 93 31 78 98 55 72 108 69 64 109 99 65 104 116 63 109 143 INFO: Final dominant points are 81 93 31 78 100 59 72 108 69 63 109 105 65 104 116 63 109 143 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 93 31 79 98 54 68 109 74 64 109 97 65 104 118 63 109 143 INFO: Distances between consecutive points are 24 25 23 22 26 INFO: Selected control points in test subject's space are 59 85 15 58 83 23 54 84 31 53 80 38 53 75 44 53 73 53 INFO: Distances between consecutive points in test subject's space are 8 9 8 8 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 108 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0341551 INFO: Points where local peeks in curvature occur are 74 107 66 (curv = 0.0576489) 68 109 73 (curv = 0.0557511) 63 109 103 (curv = 0.0546378) 65 104 116 (curv = 0.0736261) 66 103 130 (curv = 0.0714191) INFO: Intermediate dominant points are 81 93 31 78 99 55 74 107 66 63 109 101 65 104 116 61 108 142 INFO: Final dominant points are 81 93 31 78 99 55 74 107 66 63 108 106 65 104 116 61 108 142 WARN: Defaulting to equidistant control points INFO: Selected control points are 81 93 31 78 98 54 67 109 75 63 109 99 65 104 119 61 108 142 INFO: Distances between consecutive points are 24 26 24 21 24 INFO: Selected control points in test subject's space are 59 85 15 58 83 23 54 84 31 52 80 39 53 75 44 52 73 52 INFO: Distances between consecutive points in test subject's space are 8 9 9 7 8 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 92 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0326069 INFO: Points where local peeks in curvature occur are 73 109 67 (curv = 0.0363797) 68 110 76 (curv = 0.0539409) 67 110 85 (curv = 0.0352519) 67 111 92 (curv = 0.0340746) 67 110 110 (curv = 0.0536851) 67 103 123 (curv = 0.0971425) INFO: Intermediate dominant points are 83 95 38 77 103 58 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Final dominant points are 83 95 38 74 108 65 68 110 76 67 110 110 67 103 123 70 110 138 INFO: Selected control points are 83 95 38 75 107 65 68 110 76 67 110 108 67 103 122 70 110 138 INFO: Distances between consecutive points are 31 13 32 16 18 INFO: Selected control points in test subject's space are 60 85 17 57 84 28 54 84 32 54 79 42 54 74 45 56 74 51 INFO: Distances between consecutive points in test subject's space are 11 5 11 6 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 63.77 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 43 streamlines for straying off mask INFO: Rejected 31 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3512 total streamlines (min/mean/max length: 53/91/143) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1305 non-truncated streamlines (min/mean/max length: 53/97/143) INFO: Center of mass of start points: (133+/-8, 137+/-5, 41+/-10) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-5) INFO: Center of mass of end points: (115+/-13, 47+/-12, 70+/-13) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 38779 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 81 99 23 80 90 26 81 82 24 78 74 23 71 64 19 INFO: Distances between consecutive points in test subject's space are 10 8 9 13 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 14.146 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 56 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2084 total streamlines (min/mean/max length: 52/92/132) Processing pathway 4 of 18... Matching streamline ends INFO: Have 938 non-truncated streamlines (min/mean/max length: 57/100/126) INFO: Center of mass of start points: (46+/-8, 141+/-6, 42+/-10) INFO: Center of mass of midpoints: (47+/-3, 106+/-2, 58+/-4) INFO: Center of mass of end points: (65+/-12, 46+/-11, 72+/-10) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 27475 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0323469 INFO: Points where local peeks in curvature occur are 49 130 44 (curv = 0.0612801) 48 126 50 (curv = 0.0393571) 48 113 58 (curv = 0.0660797) 44 97 61 (curv = 0.0718496) 45 90 63 (curv = 0.0473725) 56 74 73 (curv = 0.0609765) 60 64 74 (curv = 0.0331985) INFO: Intermediate dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 INFO: Final dominant points are 48 145 41 49 130 44 44 97 61 56 74 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 57 71 73 76 42 76 INFO: Distances between consecutive points are 25 28 31 35 INFO: Selected control points in test subject's space are 46 101 27 46 92 26 44 81 25 50 71 24 57 61 20 INFO: Distances between consecutive points in test subject's space are 9 11 12 13 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.032913 INFO: Points where local peeks in curvature occur are 49 131 44 (curv = 0.0580746) 48 114 58 (curv = 0.0639599) 44 97 61 (curv = 0.0728882) 46 88 64 (curv = 0.0464374) 56 74 73 (curv = 0.0419059) 59 67 73 (curv = 0.0474898) 66 58 74 (curv = 0.042791) INFO: Intermediate dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 INFO: Final dominant points are 48 145 41 49 131 44 44 97 61 59 67 73 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 48 145 41 48 123 52 44 97 61 58 70 73 76 42 76 INFO: Distances between consecutive points are 25 28 33 33 INFO: Selected control points in test subject's space are 46 101 27 46 92 26 44 81 25 50 70 24 57 61 20 INFO: Distances between consecutive points in test subject's space are 9 11 13 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 45 101 27 45 92 26 45 82 25 50 71 24 57 61 21 INFO: Distances between consecutive points in test subject's space are 9 10 12 13 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 45 101 27 45 92 25 45 82 25 49 72 24 57 62 21 INFO: Distances between consecutive points in test subject's space are 9 10 11 13 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 43 100 29 46 89 26 46 78 25 49 72 24 52 64 21 INFO: Distances between consecutive points in test subject's space are 12 11 7 9 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 9.172 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 229 streamlines for straying off mask INFO: Rejected 27 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 5038 total streamlines (min/mean/max length: 8/57/103) Processing pathway 5 of 18... Matching streamline ends INFO: Have 3169 non-truncated streamlines (min/mean/max length: 8/55/100) INFO: Center of mass of start points: (127+/-7, 144+/-4, 41+/-5) INFO: Center of mass of midpoints: (125+/-3, 126+/-3, 54+/-3) INFO: Center of mass of end points: (113+/-10, 152+/-17, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 22380 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 INFO: Selected control points are 125 145 40 128 125 53 115 144 61 109 152 60 107 166 56 INFO: Distances between consecutive points are 24 24 10 15 INFO: Selected control points in test subject's space are 77 102 26 78 93 27 73 98 33 70 101 34 69 106 35 INFO: Distances between consecutive points in test subject's space are 9 9 4 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 18.44 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 317 streamlines for straying off mask INFO: Rejected 110 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6494 total streamlines (min/mean/max length: 8/62/106) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4515 non-truncated streamlines (min/mean/max length: 8/62/106) INFO: Center of mass of start points: (54+/-6, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-9, 161+/-17, 57+/-4) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23821 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0760508 INFO: Points where local peeks in curvature occur are 53 137 42 (curv = 0.0895057) 51 133 44 (curv = 0.0894911) 53 126 56 (curv = 0.131711) 66 141 59 (curv = 0.0984792) 72 163 58 (curv = 0.105343) INFO: Intermediate dominant points are 57 147 43 53 126 56 66 141 59 72 163 58 71 174 60 INFO: Final dominant points are 57 147 43 53 126 56 66 141 59 72 163 58 71 174 60 WARN: Defaulting to equidistant control points INFO: Selected control points are 57 147 43 51 129 48 59 137 61 70 155 61 71 174 60 INFO: Distances between consecutive points are 20 17 21 19 INFO: Selected control points in test subject's space are 49 101 28 47 94 26 50 95 32 55 101 34 55 108 37 INFO: Distances between consecutive points in test subject's space are 8 7 8 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0622043 INFO: Points where local peeks in curvature occur are 56 129 51 (curv = 0.122374) 59 133 58 (curv = 0.0797927) 67 143 60 (curv = 0.0668038) INFO: Intermediate dominant points are 52 148 39 56 129 51 67 143 60 71 155 62 74 172 61 INFO: Final dominant points are 52 148 39 56 129 51 67 143 60 72 162 61 74 172 61 INFO: Selected control points are 52 148 39 56 129 50 67 143 62 72 161 60 74 172 61 INFO: Distances between consecutive points are 22 21 19 11 INFO: Selected control points in test subject's space are 47 102 26 49 94 27 54 97 33 55 104 35 56 107 37 INFO: Distances between consecutive points in test subject's space are 8 8 7 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 28.947 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from 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end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2469 streamlines for straying off mask INFO: Rejected 233 streamlines for reversing direction INFO: Rejected 123 streamlines as length outliers INFO: Have 6950 total streamlines (min/mean/max length: 87/134/166) Processing pathway 7 of 18... Matching streamline ends INFO: Have 5076 non-truncated streamlines (min/mean/max length: 87/136/168) INFO: Center of mass of start points: (102+/-7, 38+/-8, 98+/-16) INFO: Center of mass of midpoints: (90+/-3, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 98+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 61291 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 63 76 31 54 70 29 54 61 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 12 11 10 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 28 65 76 31 55 71 30 52 63 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 8 9 11 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0489878 INFO: Points where local peeks in curvature occur are 107 44 86 (curv = 0.105289) 116 54 86 (curv = 0.0947602) 101 87 85 (curv = 0.0532037) 91 91 84 (curv = 0.0912266) 84 90 85 (curv = 0.0582558) 61 59 86 (curv = 0.103901) 64 52 86 (curv = 0.076793) INFO: Intermediate dominant points are 99 38 108 107 44 86 111 72 86 91 91 84 66 74 87 61 59 86 72 38 112 INFO: Final dominant points are 99 38 108 107 44 86 104 84 86 91 91 84 65 72 87 61 59 86 72 38 112 INFO: Selected control points are 99 38 108 111 46 87 108 82 87 89 91 84 65 74 88 63 56 83 72 38 112 INFO: Distances between consecutive points are 25 36 21 30 19 35 INFO: Selected control points in test subject's space are 67 55 30 72 61 24 70 73 30 63 76 31 53 70 29 52 64 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 10 14 8 12 7 12 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 67.816 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 2027 streamlines for straying off mask INFO: Rejected 264 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 25293 total streamlines (min/mean/max length: 51/89/114) Processing pathway 8 of 18... Matching streamline ends INFO: Have 20888 non-truncated streamlines (min/mean/max length: 52/90/117) INFO: Center of mass of start points: (103+/-5, 187+/-6, 76+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 187+/-6, 77+/-11) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 58019 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0521372 INFO: Points where local peeks in curvature occur are 108 166 74 (curv = 0.0525738) 103 155 76 (curv = 0.06521) 92 149 77 (curv = 0.0986181) 82 151 75 (curv = 0.0545684) 76 156 73 (curv = 0.0612074) 73 177 70 (curv = 0.0817821) INFO: Intermediate dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Final dominant points are 106 186 79 108 166 74 92 149 77 73 177 70 75 190 76 INFO: Selected control points are 106 186 79 109 167 73 89 148 77 71 175 70 75 190 76 INFO: Distances between consecutive points are 20 28 33 17 INFO: Selected control points in test subject's space are 69 109 45 70 104 40 63 97 38 55 107 41 57 111 45 INFO: Distances between consecutive points in test subject's space are 7 10 13 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 355.144 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 452 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 43 streamlines as length outliers INFO: Have 13078 total streamlines (min/mean/max length: 30/60/94) Processing pathway 9 of 18... Matching streamline ends INFO: Have 5099 non-truncated streamlines (min/mean/max length: 37/68/91) INFO: Center of mass of start points: (116+/-12, 180+/-10, 75+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-3, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 41097 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0477613 INFO: Points where local peeks in curvature occur are 114 163 73 (curv = 0.161472) 110 152 75 (curv = 0.0666645) 109 144 80 (curv = 0.0846067) INFO: Intermediate dominant points are 108 184 74 114 163 73 109 144 80 103 131 79 95 113 81 INFO: Final dominant points are 108 184 74 114 163 73 109 144 80 98 122 79 95 113 81 INFO: Selected control points are 108 184 74 112 162 74 109 144 79 99 123 79 95 113 81 INFO: Distances between consecutive points are 22 19 23 11 INFO: Selected control points in test subject's space are 70 110 43 72 102 40 71 95 38 67 88 35 65 84 34 INFO: Distances between consecutive points in test subject's space are 9 7 9 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 113.286 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Processing pathway 10 of 18... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0390412 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0682111) 67 158 77 (curv = 0.0483775) 67 142 82 (curv = 0.103237) INFO: Intermediate dominant points are 70 186 87 65 168 78 67 142 82 72 133 80 81 116 74 INFO: Final dominant points are 70 186 87 65 168 78 67 142 82 77 125 77 81 116 74 INFO: Selected control points are 70 186 87 66 167 76 68 142 81 76 126 78 81 116 74 INFO: Distances between consecutive points are 22 26 18 12 INFO: Selected control points in test subject's space are 55 108 48 53 103 41 54 94 39 57 89 35 59 86 32 INFO: Distances between consecutive points in test subject's space are 9 9 7 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 78.447 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 127 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5150 total streamlines (min/mean/max length: 25/67/135) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1383 non-truncated streamlines (min/mean/max length: 55/85/135) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 125+/-2, 105+/-2) INFO: Center of mass of end points: (98+/-4, 162+/-7, 85+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 19286 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 68 69 32 66 77 40 66 86 44 66 92 45 66 102 41 INFO: Distances between consecutive points in test subject's space are 11 10 6 11 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 24.909 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 146 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 48 streamlines as length outliers INFO: Have 4227 total streamlines (min/mean/max length: 30/65/109) Processing pathway 12 of 18... Matching streamline ends INFO: Have 898 non-truncated streamlines (min/mean/max length: 56/81/110) INFO: Center of mass of start points: (81+/-4, 81+/-7, 99+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (82+/-4, 159+/-5, 89+/-7) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 17568 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 79 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0212268 INFO: Points where local peeks in curvature occur are 79 89 103 (curv = 0.055751) 81 106 106 (curv = 0.0250421) 83 115 106 (curv = 0.0261669) 83 125 106 (curv = 0.0480091) 82 132 104 (curv = 0.0286656) INFO: Intermediate dominant points are 80 79 99 80 100 105 83 125 106 82 141 100 86 160 92 INFO: Final dominant points are 80 79 99 83 114 106 83 125 106 82 150 96 86 160 92 INFO: Selected control points are 80 79 99 82 113 107 83 126 106 82 149 96 86 160 92 INFO: Distances between consecutive points are 35 13 25 12 INFO: Selected control points in test subject's space are 59 70 34 60 80 42 60 85 44 60 94 44 61 98 45 INFO: Distances between consecutive points in test subject's space are 13 5 9 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 12.797 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 789 streamlines for straying off mask INFO: Rejected 63 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3409 total streamlines (min/mean/max length: 2/43/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 1071 non-truncated streamlines (min/mean/max length: 17/51/89) INFO: Center of mass of start points: (110+/-6, 83+/-13, 74+/-12) INFO: Center of mass of midpoints: (112+/-2, 99+/-5, 57+/-5) INFO: Center of mass of end points: (116+/-4, 121+/-14, 42+/-12) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 15655 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0243762 INFO: Points where local peeks in curvature occur are 116 113 45 (curv = 0.0532996) INFO: Intermediate dominant points are 105 80 76 110 97 60 116 113 45 116 132 33 INFO: Final dominant points are 105 80 76 113 104 53 116 113 45 116 132 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 80 76 110 97 60 116 114 44 116 132 33 INFO: Distances between consecutive points are 24 24 21 INFO: Selected control points in test subject's space are 69 74 27 71 82 24 73 90 22 73 98 22 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.02502 INFO: Points where local peeks in curvature occur are 108 90 67 (curv = 0.0360269) 114 110 47 (curv = 0.0408157) 116 118 42 (curv = 0.0600972) INFO: Intermediate dominant points are 108 80 75 111 99 60 116 118 42 117 130 33 INFO: Final dominant points are 108 80 75 113 109 49 116 118 42 117 130 33 WARN: Defaulting to equidistant control points INFO: Selected control points are 108 80 75 110 98 61 114 113 45 117 130 33 INFO: Distances between consecutive points are 23 22 21 INFO: Selected control points in test subject's space are 70 74 26 71 82 25 72 90 22 73 97 21 INFO: Distances between consecutive points in test subject's space are 8 9 7 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0427659 INFO: Points where local peeks in curvature occur are 116 106 46 (curv = 0.0649199) 119 119 44 (curv = 0.0858006) INFO: Intermediate dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 INFO: Final dominant points are 104 82 76 116 106 46 119 119 44 114 127 32 WARN: Defaulting to equidistant control points INFO: Selected control points are 104 82 76 111 96 58 119 115 44 114 127 32 INFO: Distances between consecutive points are 24 25 18 INFO: Selected control points in test subject's space are 69 74 27 71 82 24 74 91 22 72 97 21 INFO: Distances between consecutive points in test subject's space are 9 10 6 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0483925 INFO: Points where local peeks in curvature occur are 116 110 45 (curv = 0.0855854) 120 118 45 (curv = 0.124355) INFO: Intermediate dominant points are 105 86 76 112 96 58 120 118 45 116 131 36 INFO: Final dominant points are 105 86 76 116 108 46 120 118 45 116 131 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 105 86 76 112 96 58 118 113 45 116 131 36 INFO: Distances between consecutive points are 22 22 20 INFO: Selected control points in test subject's space are 69 76 28 72 82 24 74 90 22 73 97 22 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0240422 INFO: Points where local peeks in curvature occur are 112 106 50 (curv = 0.0269974) 115 116 44 (curv = 0.0463711) INFO: Intermediate dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 INFO: Final dominant points are 112 81 72 112 106 50 115 116 44 116 133 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 112 81 72 112 98 58 115 115 44 116 133 38 INFO: Distances between consecutive points are 22 22 19 INFO: Selected control points in test subject's space are 72 75 25 72 83 24 73 91 22 73 98 23 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0275015 INFO: Points where local peeks in curvature occur are 113 108 48 (curv = 0.0358726) 115 116 43 (curv = 0.0680362) INFO: Intermediate dominant points are 112 81 72 112 98 58 115 116 43 116 133 38 INFO: Final dominant points are 112 81 72 113 107 49 115 116 43 116 133 38 INFO: Selected control points are 112 81 72 111 105 50 112 113 43 116 133 38 INFO: Distances between consecutive points are 33 11 21 INFO: Selected control points in test subject's space are 72 75 25 71 86 23 71 90 22 73 98 23 INFO: Distances between consecutive points in test subject's space are 11 4 8 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 15.404 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 2371 streamlines for straying off mask INFO: Rejected 47 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 1818 total streamlines (min/mean/max length: 5/39/87) Processing pathway 14 of 18... Matching streamline ends INFO: Have 386 non-truncated streamlines (min/mean/max length: 26/52/87) INFO: Center of mass of start points: (69+/-5, 83+/-5, 76+/-7) INFO: Center of mass of midpoints: (66+/-1, 101+/-2, 57+/-2) INFO: Center of mass of end points: (61+/-3, 127+/-8, 38+/-5) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 10310 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0274293 INFO: Points where local peeks in curvature occur are 63 113 44 (curv = 0.0943638) INFO: Intermediate dominant points are 72 86 78 66 97 61 63 113 44 58 127 40 INFO: Final dominant points are 72 86 78 64 107 51 63 113 44 58 127 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 86 78 66 96 62 63 110 47 58 127 40 INFO: Distances between consecutive points are 20 21 19 INFO: Selected control points in test subject's space are 56 75 28 53 81 25 52 88 23 50 95 23 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0296438 INFO: Points where local peeks in curvature occur are 68 98 59 (curv = 0.0405308) 58 114 45 (curv = 0.0463594) 56 123 43 (curv = 0.0708832) INFO: Intermediate dominant points are 74 80 82 69 96 62 56 123 43 63 140 34 INFO: Final dominant points are 74 80 82 60 111 47 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 74 80 82 69 96 62 57 117 45 63 140 34 INFO: Distances between consecutive points are 26 30 26 INFO: Selected control points in test subject's space are 57 73 29 54 81 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 11 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0338948 INFO: Points where local peeks in curvature occur are 59 112 46 (curv = 0.0736338) 56 124 43 (curv = 0.07522) INFO: Intermediate dominant points are 73 85 77 66 101 56 56 124 43 63 140 34 INFO: Final dominant points are 73 85 77 58 114 45 56 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 85 77 66 101 57 57 118 44 63 140 34 INFO: Distances between consecutive points are 27 23 25 INFO: Selected control points in test subject's space are 56 75 28 53 84 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 8 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0335029 INFO: Points where local peeks in curvature occur are 67 99 58 (curv = 0.0404608) 59 114 45 (curv = 0.0620015) 56 124 43 (curv = 0.0669754) INFO: Intermediate dominant points are 73 84 80 67 99 58 56 124 43 63 140 34 INFO: Final dominant points are 73 84 80 67 99 58 56 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 84 80 67 99 58 57 118 44 63 140 34 INFO: Distances between consecutive points are 27 26 25 INFO: Selected control points in test subject's space are 56 74 29 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 9 9 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0296151 INFO: Points where local peeks in curvature occur are 63 116 43 (curv = 0.0951984) INFO: Intermediate dominant points are 75 88 81 66 98 61 63 116 43 58 128 38 INFO: Final dominant points are 75 88 81 64 107 51 63 116 43 58 128 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 88 81 67 97 62 64 112 46 58 128 38 INFO: Distances between consecutive points are 22 22 19 INFO: Selected control points in test subject's space are 57 76 30 54 81 25 52 89 23 50 96 23 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.035845 INFO: Points where local peeks in curvature occur are 59 114 45 (curv = 0.0607087) 56 123 43 (curv = 0.0789122) INFO: Intermediate dominant points are 73 86 74 66 101 56 56 123 43 63 140 34 INFO: Final dominant points are 73 86 74 59 114 45 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 86 74 67 100 57 57 118 44 63 140 34 INFO: Distances between consecutive points are 23 24 25 INFO: Selected control points in test subject's space are 56 76 27 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0321422 INFO: Points where local peeks in curvature occur are 58 113 46 (curv = 0.0491887) 56 118 44 (curv = 0.0716443) 56 127 42 (curv = 0.0622645) INFO: Intermediate dominant points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Final dominant points are 73 81 80 61 108 49 56 118 44 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Distances between consecutive points are 26 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 57 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.037928 INFO: Points where local peeks in curvature occur are 60 112 46 (curv = 0.0533407) 57 118 44 (curv = 0.0661796) 58 130 41 (curv = 0.064075) INFO: Intermediate dominant points are 71 89 73 63 104 53 57 118 44 63 139 34 INFO: Final dominant points are 71 89 73 61 109 48 57 118 44 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 89 73 64 103 54 57 120 44 63 139 34 INFO: Distances between consecutive points are 25 21 22 INFO: Selected control points in test subject's space are 55 77 27 52 85 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0317425 INFO: Points where local peeks in curvature occur are 69 96 61 (curv = 0.0335399) 58 113 46 (curv = 0.0525133) 56 119 44 (curv = 0.0364098) 55 125 43 (curv = 0.0654384) INFO: Intermediate dominant points are 73 81 80 69 96 61 55 125 43 63 140 34 INFO: Final dominant points are 73 81 80 69 96 61 55 125 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 45 63 140 34 INFO: Distances between consecutive points are 26 29 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 65 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0315581 INFO: Points where local peeks in curvature occur are 57 115 44 (curv = 0.0570667) 55 123 43 (curv = 0.0712494) INFO: Intermediate dominant points are 75 80 83 68 98 59 55 123 43 63 140 34 INFO: Final dominant points are 75 80 83 58 112 46 55 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 80 83 69 98 60 56 117 44 63 140 34 INFO: Distances between consecutive points are 30 28 26 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0351498 INFO: Points where local peeks in curvature occur are 62 107 49 (curv = 0.0363106) 60 112 46 (curv = 0.0452798) 58 115 44 (curv = 0.0406186) 56 123 43 (curv = 0.0718994) INFO: Intermediate dominant points are 73 88 75 66 102 55 56 123 43 63 139 34 INFO: Final dominant points are 73 88 75 59 113 45 56 123 43 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 88 75 66 102 55 56 120 43 63 139 34 INFO: Distances between consecutive points are 25 24 22 INFO: Selected control points in test subject's space are 56 76 28 53 84 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.030819 INFO: Points where local peeks in curvature occur are 59 113 46 (curv = 0.0431522) 56 122 43 (curv = 0.0682253) INFO: Intermediate dominant points are 75 88 78 66 101 56 56 122 43 63 140 34 INFO: Final dominant points are 75 88 78 59 112 46 56 122 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 88 78 66 100 57 56 120 44 63 140 34 INFO: Distances between consecutive points are 26 26 23 INFO: Selected control points in test subject's space are 57 76 29 53 83 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 10 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0324296 INFO: Points where local peeks in curvature occur are 60 111 46 (curv = 0.0564556) 56 123 43 (curv = 0.0730714) INFO: Intermediate dominant points are 73 86 74 67 100 57 56 123 43 63 139 34 INFO: Final dominant points are 73 86 74 59 112 46 56 123 43 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 86 74 67 100 58 57 118 44 63 139 34 INFO: Distances between consecutive points are 22 25 24 INFO: Selected control points in test subject's space are 56 76 27 54 83 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0304242 INFO: Points where local peeks in curvature occur are 67 101 55 (curv = 0.0310752) 58 113 44 (curv = 0.0615476) 56 126 41 (curv = 0.065121) INFO: Intermediate dominant points are 76 82 84 69 98 60 56 126 41 63 140 34 INFO: Final dominant points are 76 82 84 58 114 44 56 126 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 69 98 60 57 118 43 63 140 34 INFO: Distances between consecutive points are 30 29 25 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0318825 INFO: Points where local peeks in curvature occur are 69 98 59 (curv = 0.03237) 58 112 45 (curv = 0.0654878) 55 123 43 (curv = 0.0768589) INFO: Intermediate dominant points are 75 80 83 69 98 59 55 123 43 63 140 34 INFO: Final dominant points are 75 80 83 58 112 45 55 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 80 83 69 98 59 56 117 44 63 140 34 INFO: Distances between consecutive points are 31 27 26 INFO: Selected control points in test subject's space are 57 73 29 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 11 10 9 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0316268 INFO: Points where local peeks in curvature occur are 58 113 44 (curv = 0.0617648) 56 118 43 (curv = 0.050822) 56 127 41 (curv = 0.0642236) INFO: Intermediate dominant points are 76 82 84 69 97 61 56 127 41 63 139 34 INFO: Final dominant points are 76 82 84 57 116 44 56 127 41 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 70 97 62 57 116 44 63 139 34 INFO: Distances between consecutive points are 27 29 26 INFO: Selected control points in test subject's space are 57 73 29 55 81 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 12 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0344389 INFO: Points where local peeks in curvature occur are 60 113 47 (curv = 0.0587094) 57 120 45 (curv = 0.0637146) 57 127 43 (curv = 0.0563828) INFO: Intermediate dominant points are 69 88 73 63 103 55 57 120 45 63 140 34 INFO: Final dominant points are 69 88 73 60 111 48 57 120 45 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 88 73 63 102 56 57 120 45 63 140 34 INFO: Distances between consecutive points are 23 22 24 INFO: Selected control points in test subject's space are 55 77 27 52 84 24 49 92 24 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 9 9 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0327995 INFO: Points where local peeks in curvature occur are 69 97 60 (curv = 0.0376939) 58 113 46 (curv = 0.0510837) 55 124 43 (curv = 0.0631597) 56 129 42 (curv = 0.0494332) INFO: Intermediate dominant points are 73 81 80 69 97 60 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 69 97 60 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 45 63 140 34 INFO: Distances between consecutive points are 26 29 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 64 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313604 INFO: Points where local peeks in curvature occur are 58 113 46 (curv = 0.0505024) 56 119 44 (curv = 0.0515978) 56 128 42 (curv = 0.0567789) INFO: Intermediate dominant points are 73 81 80 68 98 59 56 128 42 63 140 34 INFO: Final dominant points are 73 81 80 57 117 45 56 128 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 68 98 59 56 119 44 63 140 34 INFO: Distances between consecutive points are 27 28 24 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0315404 INFO: Points where local peeks in curvature occur are 67 100 56 (curv = 0.0343215) 57 115 44 (curv = 0.0628178) 55 124 42 (curv = 0.0790405) INFO: Intermediate dominant points are 76 82 84 69 97 61 55 124 42 63 139 34 INFO: Final dominant points are 76 82 84 58 113 45 55 124 42 63 139 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 82 84 69 97 61 56 117 44 63 139 34 INFO: Distances between consecutive points are 28 29 25 INFO: Selected control points in test subject's space are 57 73 29 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0331918 INFO: Points where local peeks in curvature occur are 70 96 61 (curv = 0.0504604) 56 117 45 (curv = 0.0420456) 55 124 43 (curv = 0.0663317) INFO: Intermediate dominant points are 73 81 80 70 96 61 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 70 96 61 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 60 56 118 44 63 140 34 INFO: Distances between consecutive points are 26 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0313862 INFO: Points where local peeks in curvature occur are 69 96 61 (curv = 0.0415083) 58 114 46 (curv = 0.0469165) 55 124 43 (curv = 0.0730865) INFO: Intermediate dominant points are 73 81 80 69 96 61 55 124 43 63 140 34 INFO: Final dominant points are 73 81 80 69 96 61 55 124 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 80 69 97 61 57 117 45 63 140 34 INFO: Distances between consecutive points are 25 28 26 INFO: Selected control points in test subject's space are 56 73 28 54 82 25 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 55 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0361745 INFO: Points where local peeks in curvature occur are 59 114 45 (curv = 0.0497179) 56 123 43 (curv = 0.087933) INFO: Intermediate dominant points are 71 89 72 63 104 53 56 123 43 63 140 34 INFO: Final dominant points are 71 89 72 59 114 45 56 123 43 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 89 72 63 104 53 56 121 44 63 140 34 INFO: Distances between consecutive points are 25 20 23 INFO: Selected control points in test subject's space are 55 77 27 52 85 23 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 60 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0318213 INFO: Points where local peeks in curvature occur are 56 119 44 (curv = 0.048675) 56 125 42 (curv = 0.0539669) INFO: Intermediate dominant points are 75 87 75 66 101 56 56 125 42 63 140 34 INFO: Final dominant points are 75 87 75 57 115 45 56 125 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 75 87 75 67 100 57 56 119 44 63 140 34 INFO: Distances between consecutive points are 24 26 24 INFO: Selected control points in test subject's space are 57 76 27 54 83 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 8 10 9 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0337472 INFO: Points where local peeks in curvature occur are 70 96 61 (curv = 0.0378976) 57 113 45 (curv = 0.0504477) 55 119 44 (curv = 0.0519547) 55 127 42 (curv = 0.0546405) INFO: Intermediate dominant points are 73 81 79 70 96 61 55 127 42 63 140 34 INFO: Final dominant points are 73 81 79 70 96 61 55 127 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 55 118 44 63 140 34 INFO: Distances between consecutive points are 27 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0338422 INFO: Points where local peeks in curvature occur are 67 100 55 (curv = 0.033996) 57 112 45 (curv = 0.0479258) 55 119 44 (curv = 0.0659095) 55 127 41 (curv = 0.0619004) INFO: Intermediate dominant points are 73 81 79 69 98 59 55 119 44 63 140 34 INFO: Final dominant points are 73 81 79 61 107 49 55 119 44 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 55 119 44 63 140 34 INFO: Distances between consecutive points are 27 29 25 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0331925 INFO: Points where local peeks in curvature occur are 69 99 58 (curv = 0.0503239) 57 114 44 (curv = 0.0650247) 55 125 42 (curv = 0.0702716) INFO: Intermediate dominant points are 76 81 82 69 98 59 55 125 42 63 140 34 INFO: Final dominant points are 76 81 82 57 114 44 55 125 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 81 82 70 97 60 56 116 44 63 140 34 INFO: Distances between consecutive points are 28 29 27 INFO: Selected control points in test subject's space are 57 73 29 55 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 56 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0354402 INFO: Points where local peeks in curvature occur are 58 113 47 (curv = 0.054599) 56 119 45 (curv = 0.0498879) 56 128 42 (curv = 0.0637215) INFO: Intermediate dominant points are 70 88 72 58 113 47 56 128 42 63 140 34 INFO: Final dominant points are 70 88 72 58 113 47 56 128 42 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 88 72 62 103 54 56 121 44 63 140 34 INFO: Distances between consecutive points are 25 21 23 INFO: Selected control points in test subject's space are 55 77 27 51 85 24 49 92 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 9 7 9 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0346843 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0456736) 62 104 51 (curv = 0.0408854) 57 114 45 (curv = 0.048472) 55 127 41 (curv = 0.0632786) INFO: Intermediate dominant points are 73 81 79 69 98 58 55 127 41 63 140 34 INFO: Final dominant points are 73 81 79 56 115 44 55 127 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 98 59 56 116 44 63 140 34 INFO: Distances between consecutive points are 27 27 27 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0322995 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0494916) 61 106 50 (curv = 0.0343319) 57 114 45 (curv = 0.0446841) 55 119 44 (curv = 0.0541963) 55 128 41 (curv = 0.0659957) INFO: Intermediate dominant points are 73 80 79 68 99 57 56 117 44 63 140 34 INFO: Final dominant points are 73 80 79 68 99 57 55 128 41 63 140 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 80 79 69 97 60 56 115 45 63 140 34 INFO: Distances between consecutive points are 26 27 28 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 90 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 9 10 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0457205 INFO: Points where local peeks in curvature occur are 62 108 47 (curv = 0.0460582) 57 115 41 (curv = 0.0998232) INFO: Intermediate dominant points are 63 85 69 64 101 56 57 115 41 61 132 34 INFO: Final dominant points are 63 85 69 62 107 48 57 115 41 61 132 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 85 69 64 101 57 57 114 41 61 132 34 INFO: Distances between consecutive points are 20 22 20 INFO: Selected control points in test subject's space are 52 76 25 52 84 24 49 90 21 51 98 22 INFO: Distances between consecutive points in test subject's space are 8 7 8 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 69 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0347437 INFO: Points where local peeks in curvature occur are 68 99 57 (curv = 0.0400344) 57 113 45 (curv = 0.0481061) 55 117 44 (curv = 0.078974) 55 127 41 (curv = 0.0626145) INFO: Intermediate dominant points are 73 81 79 69 98 58 55 117 44 63 140 34 INFO: Final dominant points are 73 81 79 61 106 50 55 117 44 63 140 34 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 73 81 79 69 97 59 55 116 44 63 140 34 INFO: Distances between consecutive points are 26 28 27 INFO: Selected control points in test subject's space are 56 73 28 54 82 24 49 91 23 52 100 23 INFO: Distances between consecutive points in test subject's space are 10 10 9 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0419896 INFO: Points where local peeks in curvature occur are 57 117 41 (curv = 0.0986815) INFO: Intermediate dominant points are 63 85 69 64 101 56 57 117 41 61 132 34 INFO: Final dominant points are 63 85 69 62 108 48 57 117 41 61 132 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 63 85 69 64 101 56 57 117 41 61 132 34 INFO: Distances between consecutive points are 21 23 17 INFO: Selected control points in test subject's space are 52 76 25 52 84 24 49 91 22 51 98 22 INFO: Distances between consecutive points in test subject's space are 8 8 7 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0337172 INFO: Points where local peeks in curvature occur are 69 91 67 (curv = 0.0475023) 64 106 53 (curv = 0.03459) 63 111 44 (curv = 0.0725888) INFO: Intermediate dominant points are 69 84 75 69 91 67 63 111 44 61 119 40 INFO: Final dominant points are 69 84 75 69 91 67 63 111 44 61 119 40 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 69 84 75 67 96 63 64 108 50 61 119 40 INFO: Distances between consecutive points are 17 18 15 INFO: Selected control points in test subject's space are 55 75 27 54 81 25 52 87 23 51 92 22 INFO: Distances between consecutive points in test subject's space are 6 7 5 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0438157 INFO: Points where local peeks in curvature occur are 62 114 45 (curv = 0.0883861) 59 127 43 (curv = 0.124035) INFO: Intermediate dominant points are 62 84 68 64 101 57 62 114 45 58 133 35 INFO: Final dominant points are 62 84 68 63 105 54 62 114 45 58 133 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 64 100 58 62 118 44 58 133 35 INFO: Distances between consecutive points are 19 23 18 INFO: Selected control points in test subject's space are 52 76 25 52 83 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0367799 INFO: Points where local peeks in curvature occur are 62 115 44 (curv = 0.0943394) INFO: Intermediate dominant points are 61 84 68 65 100 59 62 115 44 58 132 38 INFO: Final dominant points are 61 84 68 63 107 52 62 115 44 58 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 65 100 59 62 115 44 58 132 38 INFO: Distances between consecutive points are 19 21 18 INFO: Selected control points in test subject's space are 51 76 25 53 83 25 51 90 22 50 97 23 INFO: Distances between consecutive points in test subject's space are 7 8 7 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0432847 INFO: Points where local peeks in curvature occur are 62 109 48 (curv = 0.0695036) 61 115 45 (curv = 0.066256) 59 125 45 (curv = 0.0725883) INFO: Intermediate dominant points are 61 84 68 62 109 48 59 125 45 58 135 35 INFO: Final dominant points are 61 84 68 62 109 48 59 125 45 58 135 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 64 102 56 60 118 45 58 135 35 INFO: Distances between consecutive points are 22 20 20 INFO: Selected control points in test subject's space are 51 76 25 52 84 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 8 7 7 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0435702 INFO: Points where local peeks in curvature occur are 62 109 48 (curv = 0.0695036) 61 115 45 (curv = 0.0650396) INFO: Intermediate dominant points are 61 84 68 62 109 48 60 120 45 58 134 35 INFO: Final dominant points are 61 84 68 62 109 48 58 128 44 58 134 35 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 64 102 56 60 118 45 58 134 35 INFO: Distances between consecutive points are 22 20 19 INFO: Selected control points in test subject's space are 51 76 25 52 84 24 51 91 23 50 98 23 INFO: Distances between consecutive points in test subject's space are 8 7 7 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 43 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0343432 INFO: Points where local peeks in curvature occur are 65 92 66 (curv = 0.0778395) 63 115 44 (curv = 0.0824412) INFO: Intermediate dominant points are 61 84 68 65 99 59 63 115 44 58 127 39 INFO: Final dominant points are 61 84 68 64 108 51 63 115 44 58 127 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 61 84 68 65 99 59 63 113 45 58 127 39 INFO: Distances between consecutive points are 18 20 16 INFO: Selected control points in test subject's space are 51 76 25 53 83 24 52 89 22 50 95 23 INFO: Distances between consecutive points in test subject's space are 7 6 6 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0375003 INFO: Points where local peeks in curvature occur are 65 92 65 (curv = 0.0501599) 65 97 62 (curv = 0.0460349) 63 115 44 (curv = 0.0660475) INFO: Intermediate dominant points are 62 84 68 65 99 60 63 115 44 59 130 39 INFO: Final dominant points are 62 84 68 63 108 51 63 115 44 59 130 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 99 61 63 112 46 59 130 39 INFO: Distances between consecutive points are 17 20 20 INFO: Selected control points in test subject's space are 52 76 25 53 82 25 52 89 23 50 96 23 INFO: Distances between consecutive points in test subject's space are 6 7 7 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0367409 INFO: Points where local peeks in curvature occur are 63 114 45 (curv = 0.0901783) INFO: Intermediate dominant points are 62 84 68 65 101 58 63 114 45 59 131 39 INFO: Final dominant points are 62 84 68 63 107 53 63 114 45 59 131 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 100 59 63 113 46 59 131 39 INFO: Distances between consecutive points are 19 18 20 INFO: Selected control points in test subject's space are 52 76 25 53 83 25 52 89 23 50 96 24 INFO: Distances between consecutive points in test subject's space are 7 6 7 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 41 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0337365 INFO: Points where local peeks in curvature occur are 64 107 53 (curv = 0.0413051) 64 111 45 (curv = 0.0644957) INFO: Intermediate dominant points are 67 84 73 66 97 62 64 111 45 61 119 40 INFO: Final dominant points are 67 84 73 64 107 52 64 111 45 61 119 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 67 84 73 66 96 63 64 108 51 61 119 40 INFO: Distances between consecutive points are 16 17 16 INFO: Selected control points in test subject's space are 54 75 26 53 81 25 52 87 23 51 92 22 INFO: Distances between consecutive points in test subject's space are 6 6 5 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 52 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0346344 INFO: Points where local peeks in curvature occur are 63 116 45 (curv = 0.0676922) INFO: Intermediate dominant points are 62 84 68 65 101 59 63 116 45 59 132 38 INFO: Final dominant points are 62 84 68 63 108 52 63 116 45 59 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 101 59 63 116 45 59 132 38 INFO: Distances between consecutive points are 19 21 18 INFO: Selected control points in test subject's space are 52 76 25 53 83 25 52 90 23 50 97 23 INFO: Distances between consecutive points in test subject's space are 7 7 7 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0379823 INFO: Points where local peeks in curvature occur are 65 93 65 (curv = 0.0819611) 63 115 45 (curv = 0.0943796) INFO: Intermediate dominant points are 62 84 68 65 100 59 63 115 45 59 132 38 INFO: Final dominant points are 62 84 68 63 107 53 63 115 45 59 132 38 WARN: Defaulting to equidistant control points INFO: Selected control points are 62 84 68 65 99 60 63 114 45 59 132 38 INFO: Distances between consecutive points are 17 21 20 INFO: Selected control points in test subject's space are 52 76 25 53 82 25 52 90 23 50 97 23 INFO: Distances between consecutive points in test subject's space are 6 8 7 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0299391 INFO: Points where local peeks in curvature occur are 64 104 56 (curv = 0.0664447) INFO: Intermediate dominant points are 76 80 77 70 94 66 64 104 56 61 119 40 INFO: Final dominant points are 76 80 77 68 97 62 64 104 56 61 119 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 76 80 77 70 94 66 64 107 52 61 119 40 INFO: Distances between consecutive points are 19 20 17 INFO: Selected control points in test subject's space are 57 73 27 55 80 26 52 86 24 51 92 22 INFO: Distances between consecutive points in test subject's space are 7 7 6 WARN: Could not find satisfactory control point fit - try 45 Finding center streamline INFO: Step is 3 voxels WARN: Turning off deviation check for center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 40 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 7 INFO: Minimum allowable curvature at a dominant point is 0.0285059 INFO: Points where local peeks in curvature occur are 67 88 69 (curv = 0.0819413) 65 100 60 (curv = 0.0291358) 65 106 53 (curv = 0.0539817) INFO: Intermediate dominant points are 70 86 75 67 94 65 65 106 53 60 117 44 INFO: Final dominant points are 70 86 75 65 100 60 65 106 53 60 117 44 INFO: Selected control points are 70 86 75 64 98 59 63 104 52 60 117 44 INFO: Distances between consecutive points are 21 9 16 INFO: Selected control points in test subject's space are 55 76 27 52 82 24 52 85 23 51 91 23 INFO: Distances between consecutive points in test subject's space are 7 3 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 7.067 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 895 streamlines for straying off mask INFO: Rejected 614 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 8728 total streamlines (min/mean/max length: 20/58/101) Processing pathway 15 of 18... Matching streamline ends INFO: Have 4068 non-truncated streamlines (min/mean/max length: 26/64/103) INFO: Center of mass of start points: (145+/-6, 127+/-5, 98+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 103+/-4) INFO: Center of mass of end points: (141+/-9, 84+/-10, 111+/-11) INFO: Split streamlines into 14 segments Computing path histograms INFO: Total streamline volume is 44230 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.05886 INFO: Points where local peeks in curvature occur are 129 115 99 (curv = 0.0903529) 130 86 103 (curv = 0.141374) INFO: Intermediate dominant points are 150 131 97 129 115 99 129 102 102 130 86 103 150 86 113 INFO: Final dominant points are 150 131 97 129 115 99 128 95 103 130 86 103 150 86 113 INFO: Selected control points are 150 131 97 129 115 98 129 96 103 130 86 104 150 86 113 INFO: Distances between consecutive points are 26 20 10 22 INFO: Selected control points in test subject's space are 87 88 42 79 83 39 79 75 38 79 72 36 88 71 39 INFO: Distances between consecutive points in test subject's space are 10 8 4 10 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 60.073 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 3250 streamlines for straying off mask INFO: Rejected 157 streamlines for reversing direction INFO: Rejected 45 streamlines as length outliers INFO: Have 12170 total streamlines (min/mean/max length: 18/62/99) Processing pathway 16 of 18... Matching streamline ends INFO: Have 6307 non-truncated streamlines (min/mean/max length: 27/69/98) INFO: Center of mass of start points: (34+/-7, 130+/-5, 99+/-11) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 80+/-10, 113+/-11) INFO: Split streamlines into 16 segments Computing path histograms INFO: Total streamline volume is 51117 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 72 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0635991 INFO: Points where local peeks in curvature occur are 52 114 101 (curv = 0.122291) 51 106 104 (curv = 0.0802017) 54 94 105 (curv = 0.0743668) 53 86 103 (curv = 0.198502) INFO: Intermediate dominant points are 28 135 97 52 114 101 52 104 104 53 86 103 34 77 116 INFO: Final dominant points are 28 135 97 52 114 101 54 95 105 53 86 103 34 77 116 WARN: Defaulting to equidistant control points INFO: Selected control points are 28 135 97 45 122 99 51 106 104 53 88 103 34 77 116 INFO: Distances between consecutive points are 21 18 18 26 INFO: Selected control points in test subject's space are 38 89 43 45 84 41 48 78 40 48 72 37 41 66 39 INFO: Distances between consecutive points in test subject's space are 9 7 7 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0605977 INFO: Points where local peeks in curvature occur are 40 123 95 (curv = 0.0756807) 51 118 101 (curv = 0.0874053) 54 111 103 (curv = 0.077998) 53 97 106 (curv = 0.0608137) 52 79 102 (curv = 0.133891) INFO: Intermediate dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Final dominant points are 31 131 96 51 118 101 53 97 106 52 79 102 42 73 114 INFO: Selected control points are 31 131 96 51 117 100 54 98 106 52 79 102 42 73 114 INFO: Distances between consecutive points are 25 20 20 17 INFO: Selected control points in test subject's space are 39 88 42 48 82 40 49 75 39 48 69 35 44 65 38 INFO: Distances between consecutive points in test subject's space are 11 7 7 6 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 113.742 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 1054 streamlines for straying off mask INFO: Rejected 41 streamlines for reversing direction INFO: Rejected 26 streamlines as length outliers INFO: Have 6773 total streamlines (min/mean/max length: 34/89/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4633 non-truncated streamlines (min/mean/max length: 40/91/136) INFO: Center of mass of start points: (144+/-7, 132+/-5, 94+/-10) INFO: Center of mass of midpoints: (126+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 66+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 41575 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0428344 INFO: Points where local peeks in curvature occur are 129 117 99 (curv = 0.11744) 125 98 102 (curv = 0.04563) 123 87 99 (curv = 0.0805228) INFO: Intermediate dominant points are 147 135 90 129 117 99 123 87 99 129 80 85 142 87 63 INFO: Final dominant points are 147 135 90 129 117 99 123 87 99 135 81 74 142 87 63 WARN: Defaulting to equidistant control points INFO: Selected control points are 147 135 90 130 118 98 125 98 102 127 81 88 142 87 63 INFO: Distances between consecutive points are 25 21 22 30 INFO: Selected control points in test subject's space are 86 91 40 79 84 40 77 76 38 78 72 30 84 78 24 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0456772 INFO: Points where local peeks in curvature occur are 136 126 96 (curv = 0.067624) 129 118 98 (curv = 0.0877839) 128 102 101 (curv = 0.0507271) 126 84 96 (curv = 0.100583) INFO: Intermediate dominant points are 144 136 102 129 118 98 126 84 96 129 82 81 146 84 63 INFO: Final dominant points are 144 136 102 129 118 98 126 84 96 135 80 71 146 84 63 INFO: Selected control points are 144 136 102 130 117 99 126 86 97 134 81 71 146 84 63 INFO: Distances between consecutive points are 24 31 28 15 INFO: Selected control points in test subject's space are 85 89 44 79 83 40 78 73 34 81 75 25 85 77 23 INFO: Distances between consecutive points in test subject's space are 9 12 10 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 45.514 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 635 streamlines for straying off mask INFO: Rejected 12 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2476 total streamlines (min/mean/max length: 31/88/129) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1528 non-truncated streamlines (min/mean/max length: 55/91/131) INFO: Center of mass of start points: (40+/-9, 134+/-8, 97+/-14) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 104+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 26700 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 44 92 39 49 84 40 50 75 38 47 72 30 38 75 25 INFO: Distances between consecutive points in test subject's space are 9 9 9 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498729 INFO: Points where local peeks in curvature occur are 53 119 100 (curv = 0.0848449) 54 100 104 (curv = 0.0786155) 53 82 92 (curv = 0.0664417) 47 80 79 (curv = 0.058139) INFO: Intermediate dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 INFO: Final dominant points are 33 129 95 53 119 100 54 100 104 53 82 92 27 90 71 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 95 53 116 100 55 94 102 48 80 82 27 90 71 INFO: Distances between consecutive points are 24 22 25 26 INFO: Selected control points in test subject's space are 40 87 41 48 82 40 49 74 37 46 72 29 38 77 27 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0525215 INFO: Points where local peeks in curvature occur are 50 121 99 (curv = 0.0879324) 54 99 104 (curv = 0.0865024) 53 82 92 (curv = 0.0741171) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 INFO: Final dominant points are 35 128 94 50 121 99 54 99 104 53 82 92 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 94 102 48 80 83 28 90 70 INFO: Distances between consecutive points are 23 21 24 26 INFO: Selected control points in test subject's space are 41 87 40 48 82 40 49 74 37 46 72 29 38 78 27 INFO: Distances between consecutive points in test subject's space are 9 9 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0569891 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.0825601) 52 115 102 (curv = 0.0819523) 56 95 104 (curv = 0.0771318) 55 89 102 (curv = 0.0667286) 53 82 95 (curv = 0.0895094) INFO: Intermediate dominant points are 33 129 101 51 118 101 53 82 95 50 82 84 34 77 77 INFO: Final dominant points are 33 129 101 51 118 101 53 82 95 43 83 73 34 77 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 50 82 85 34 77 77 INFO: Distances between consecutive points are 25 22 21 19 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 73 37 47 73 30 41 72 27 INFO: Distances between consecutive points in test subject's space are 10 9 8 7 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543583 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0612415) 56 96 104 (curv = 0.0706371) 56 91 103 (curv = 0.060168) 54 85 101 (curv = 0.0837136) 53 80 91 (curv = 0.0613242) INFO: Intermediate dominant points are 33 129 101 53 115 102 54 85 101 52 80 83 33 75 75 INFO: Final dominant points are 33 129 101 53 115 102 54 85 101 44 82 73 33 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 52 80 84 33 75 75 INFO: Distances between consecutive points are 25 22 23 22 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 73 37 48 72 29 40 72 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0522708 INFO: Points where local peeks in curvature occur are 52 118 100 (curv = 0.0976288) 53 100 104 (curv = 0.0762681) 54 97 103 (curv = 0.0775172) 53 83 93 (curv = 0.068704) 50 80 86 (curv = 0.0639931) INFO: Intermediate dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 INFO: Final dominant points are 35 128 94 52 118 100 54 97 103 53 83 93 32 90 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 128 94 53 115 100 54 95 103 49 80 84 32 90 69 INFO: Distances between consecutive points are 23 20 25 25 INFO: Selected control points in test subject's space are 41 87 40 48 82 40 49 74 38 47 72 29 40 78 26 INFO: Distances between consecutive points in test subject's space are 9 8 9 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 93 103 52 80 87 34 78 74 INFO: Distances between consecutive points are 24 22 21 22 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 74 37 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 8 8 9 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543301 INFO: Points where local peeks in curvature occur are 51 117 101 (curv = 0.0925797) 56 96 104 (curv = 0.0835785) 55 88 102 (curv = 0.0685132) 52 82 95 (curv = 0.0938857) INFO: Intermediate dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 INFO: Final dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 34 128 101 52 115 102 56 93 103 50 82 85 34 78 75 INFO: Distances between consecutive points are 22 22 22 19 INFO: Selected control points in test subject's space are 41 86 43 48 81 41 50 74 37 47 73 30 41 73 26 INFO: Distances between consecutive points in test subject's space are 9 8 8 7 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 40 86 43 48 81 41 50 74 38 48 71 31 41 73 26 INFO: Distances between consecutive points in test subject's space are 10 8 8 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0389276 INFO: Points where local peeks in curvature occur are 54 120 102 (curv = 0.0544164) 55 98 105 (curv = 0.0787634) 53 84 96 (curv = 0.0727762) 52 80 84 (curv = 0.0546124) INFO: Intermediate dominant points are 49 139 101 54 120 102 55 98 105 53 84 96 36 87 63 INFO: Final dominant points are 49 139 101 54 120 102 55 98 105 53 84 96 36 87 63 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 139 101 54 117 103 55 95 104 52 80 85 36 87 63 INFO: Distances between consecutive points are 23 22 24 28 INFO: Selected control points in test subject's space are 47 90 44 49 82 41 49 74 38 48 72 30 41 78 24 INFO: Distances between consecutive points in test subject's space are 9 9 8 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0512121 INFO: Points where local peeks in curvature occur are 56 138 99 (curv = 0.154444) 58 130 100 (curv = 0.0788698) 54 118 104 (curv = 0.0909172) 54 96 105 (curv = 0.0656089) 51 81 95 (curv = 0.0578037) 48 77 78 (curv = 0.0629418) INFO: Intermediate dominant points are 43 142 105 56 138 99 54 118 104 54 96 105 37 79 66 INFO: Final dominant points are 43 142 105 56 138 99 54 118 104 54 96 105 37 79 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 142 105 57 127 101 54 102 105 50 79 90 37 79 66 INFO: Distances between consecutive points are 21 25 28 27 INFO: Selected control points in test subject's space are 44 90 46 50 86 42 49 76 40 47 71 31 42 74 23 INFO: Distances between consecutive points in test subject's space are 8 10 10 10 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0494247 INFO: Points where local peeks in curvature occur are 54 117 105 (curv = 0.13229) 55 100 106 (curv = 0.0681994) 54 82 95 (curv = 0.0588466) 51 78 83 (curv = 0.0653682) INFO: Intermediate dominant points are 32 130 110 54 117 105 55 94 105 51 78 83 36 80 67 INFO: Final dominant points are 32 130 110 54 117 105 54 83 96 51 78 83 36 80 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 130 110 53 118 105 55 94 105 52 78 85 36 80 67 INFO: Distances between consecutive points are 25 24 26 24 INFO: Selected control points in test subject's space are 40 85 46 48 82 42 49 74 38 48 71 29 41 75 24 INFO: Distances between consecutive points in test subject's space are 9 9 10 9 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0488118 INFO: Points where local peeks in curvature occur are 56 118 102 (curv = 0.0846267) 58 108 104 (curv = 0.064302) 54 88 96 (curv = 0.084832) 50 85 84 (curv = 0.0628578) INFO: Intermediate dominant points are 37 138 107 56 118 102 58 101 103 54 88 96 36 83 74 INFO: Final dominant points are 37 138 107 56 118 102 58 99 102 54 88 96 36 83 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 138 107 55 120 102 58 101 103 52 86 88 36 83 74 INFO: Distances between consecutive points are 26 19 22 21 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 39 48 74 31 41 75 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 8 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0478581 INFO: Points where local peeks in curvature occur are 54 119 103 (curv = 0.0684585) 57 108 104 (curv = 0.0547259) 57 96 102 (curv = 0.0625916) 54 90 97 (curv = 0.0779447) 52 87 88 (curv = 0.0610537) 45 84 80 (curv = 0.052824) INFO: Intermediate dominant points are 35 138 109 54 119 103 57 102 103 54 90 97 34 82 75 INFO: Final dominant points are 35 138 109 54 119 103 57 99 103 54 90 97 34 82 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 138 109 53 122 103 57 102 103 53 87 89 34 82 75 INFO: Distances between consecutive points are 25 20 21 24 INFO: Selected control points in test subject's space are 41 88 47 48 84 42 50 77 39 48 74 32 41 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0488205 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0632585) 58 101 102 (curv = 0.0558445) 57 97 102 (curv = 0.0633297) 53 88 94 (curv = 0.0709756) 51 87 87 (curv = 0.0574877) 44 84 80 (curv = 0.0611981) INFO: Intermediate dominant points are 36 137 105 55 119 101 57 100 102 53 88 94 30 82 77 INFO: Final dominant points are 36 137 105 55 119 101 57 99 102 53 88 94 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 105 55 119 101 57 100 102 50 86 85 30 82 77 INFO: Distances between consecutive points are 26 19 23 22 INFO: Selected control points in test subject's space are 42 88 45 49 83 41 50 76 38 47 74 31 39 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0518764 INFO: Points where local peeks in curvature occur are 54 118 102 (curv = 0.0750082) 57 104 103 (curv = 0.0673786) 53 90 96 (curv = 0.074314) 50 87 86 (curv = 0.0641537) 43 84 79 (curv = 0.0872907) INFO: Intermediate dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 INFO: Final dominant points are 35 135 102 54 118 102 53 90 96 43 84 79 30 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 35 135 102 54 118 102 57 99 102 51 88 87 30 83 77 INFO: Distances between consecutive points are 25 19 20 24 INFO: Selected control points in test subject's space are 41 88 44 49 82 41 50 76 38 47 74 32 39 74 28 INFO: Distances between consecutive points in test subject's space are 10 7 7 9 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0511857 INFO: Points where local peeks in curvature occur are 54 119 102 (curv = 0.0769944) 57 97 102 (curv = 0.0642214) 54 90 97 (curv = 0.0872918) 51 87 87 (curv = 0.0563749) 44 84 80 (curv = 0.0717043) INFO: Intermediate dominant points are 36 137 106 54 119 102 57 100 102 54 90 97 32 82 77 INFO: Final dominant points are 36 137 106 54 119 102 57 100 102 54 90 97 32 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 106 54 120 102 57 100 102 51 87 87 32 82 77 INFO: Distances between consecutive points are 25 20 21 22 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 38 47 74 31 40 74 27 INFO: Distances between consecutive points in test subject's space are 9 8 8 8 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 79 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.050021 INFO: Points where local peeks in curvature occur are 55 118 102 (curv = 0.0738944) 57 97 102 (curv = 0.0768896) 53 89 95 (curv = 0.0774534) 51 87 86 (curv = 0.064262) 44 84 80 (curv = 0.0713094) INFO: Intermediate dominant points are 36 137 106 55 118 102 57 99 102 53 89 95 30 82 77 INFO: Final dominant points are 36 137 106 55 118 102 57 98 102 53 89 95 30 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 106 54 120 102 57 101 102 51 87 87 30 82 77 INFO: Distances between consecutive points are 25 19 21 24 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 77 38 47 74 31 39 74 27 INFO: Distances between consecutive points in test subject's space are 9 7 8 9 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.051764 INFO: Points where local peeks in curvature occur are 45 126 103 (curv = 0.0619513) 54 118 103 (curv = 0.0755984) 57 100 103 (curv = 0.0609776) 54 90 97 (curv = 0.0734852) 51 86 88 (curv = 0.0583922) 45 84 81 (curv = 0.0810162) INFO: Intermediate dominant points are 34 138 109 54 118 103 54 90 97 45 84 81 27 82 77 INFO: Final dominant points are 34 138 109 54 118 103 54 90 97 45 84 81 27 82 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 138 109 52 121 103 57 101 103 51 86 88 27 82 77 INFO: Distances between consecutive points are 25 21 22 27 INFO: Selected control points in test subject's space are 41 88 47 48 83 42 50 76 39 47 74 31 38 74 27 INFO: Distances between consecutive points in test subject's space are 10 8 9 10 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0506591 INFO: Points where local peeks in curvature occur are 55 118 102 (curv = 0.0752598) 57 101 103 (curv = 0.0565709) 57 97 101 (curv = 0.0656447) 53 89 95 (curv = 0.0757841) 45 84 81 (curv = 0.0758142) INFO: Intermediate dominant points are 36 137 107 55 118 102 53 89 95 45 84 81 30 82 78 INFO: Final dominant points are 36 137 107 55 118 102 53 89 95 45 84 81 30 82 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 137 107 54 120 102 57 100 102 50 87 86 30 82 78 INFO: Distances between consecutive points are 25 20 22 22 INFO: Selected control points in test subject's space are 42 88 46 49 83 42 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 9 8 8 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0503007 INFO: Points where local peeks in curvature occur are 48 125 102 (curv = 0.055809) 54 117 103 (curv = 0.0643) 57 99 103 (curv = 0.0941857) 53 89 95 (curv = 0.0698788) 51 87 87 (curv = 0.0667055) 44 84 81 (curv = 0.101995) INFO: Intermediate dominant points are 34 138 108 54 117 103 57 99 103 44 84 81 27 83 77 INFO: Final dominant points are 34 138 108 54 117 103 57 99 103 44 84 81 27 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 138 108 52 121 102 57 100 103 49 86 85 27 83 77 INFO: Distances between consecutive points are 25 22 24 24 INFO: Selected control points in test subject's space are 41 88 47 48 83 42 50 76 39 47 74 31 38 74 28 INFO: Distances between consecutive points in test subject's space are 10 8 9 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0541642 INFO: Points where local peeks in curvature occur are 54 118 102 (curv = 0.080978) 57 102 103 (curv = 0.0832649) 53 89 95 (curv = 0.0800759) 50 87 86 (curv = 0.0736194) 42 83 80 (curv = 0.0707197) INFO: Intermediate dominant points are 36 134 103 54 118 102 57 102 103 53 89 95 30 83 77 INFO: Final dominant points are 36 134 103 54 118 102 57 102 103 53 89 95 30 83 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 134 103 54 117 102 56 99 102 50 87 86 30 83 77 INFO: Distances between consecutive points are 25 18 21 22 INFO: Selected control points in test subject's space are 42 88 44 49 82 41 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 10 7 8 9 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0521376 INFO: Points where local peeks in curvature occur are 54 117 102 (curv = 0.0597245) 57 101 103 (curv = 0.0642365) 56 97 102 (curv = 0.0643619) 53 89 95 (curv = 0.0806126) 46 85 81 (curv = 0.0876695) INFO: Intermediate dominant points are 36 134 104 54 117 102 53 89 95 46 85 81 30 83 78 INFO: Final dominant points are 36 134 104 54 117 102 53 89 95 46 85 81 30 83 78 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 134 104 54 117 102 56 98 102 50 87 86 30 83 78 INFO: Distances between consecutive points are 25 19 20 22 INFO: Selected control points in test subject's space are 42 87 45 49 82 41 50 76 38 47 74 31 39 74 28 INFO: Distances between consecutive points in test subject's space are 9 7 8 9 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0559283 INFO: Points where local peeks in curvature occur are 45 129 97 (curv = 0.0682105) 55 122 100 (curv = 0.115353) 56 108 104 (curv = 0.0671874) 57 98 104 (curv = 0.0735013) 53 87 98 (curv = 0.0667873) 48 83 81 (curv = 0.0675755) 43 82 76 (curv = 0.0737202) INFO: Intermediate dominant points are 32 137 101 55 122 100 57 98 104 43 82 76 29 72 77 INFO: Final dominant points are 32 137 101 55 122 100 57 98 104 43 82 76 29 72 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 137 101 55 121 100 57 97 103 49 83 84 29 72 77 INFO: Distances between consecutive points are 28 24 25 24 INFO: Selected control points in test subject's space are 40 89 44 49 84 41 50 75 38 47 73 30 39 70 26 INFO: Distances between consecutive points in test subject's space are 11 10 9 9 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0567715 INFO: Points where local peeks in curvature occur are 44 129 97 (curv = 0.0653868) 53 124 100 (curv = 0.0911758) 55 114 101 (curv = 0.059519) 57 106 104 (curv = 0.0621205) 57 98 104 (curv = 0.0762165) 51 84 93 (curv = 0.0678794) 46 83 78 (curv = 0.084517) INFO: Intermediate dominant points are 32 137 102 53 124 100 57 98 104 46 83 78 29 72 77 INFO: Final dominant points are 32 137 102 53 124 100 57 98 104 46 83 78 29 72 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 32 137 102 54 122 101 57 98 104 49 83 85 29 72 77 INFO: Distances between consecutive points are 27 24 25 24 INFO: Selected control points in test subject's space are 40 89 45 49 84 42 50 75 39 47 73 30 39 70 26 INFO: Distances between consecutive points in test subject's space are 11 10 10 9 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0496265 INFO: Points where local peeks in curvature occur are 53 121 101 (curv = 0.132282) 55 100 106 (curv = 0.0717278) 55 82 97 (curv = 0.0657936) 51 77 91 (curv = 0.0799275) 44 79 76 (curv = 0.062834) INFO: Intermediate dominant points are 31 136 98 53 121 101 55 100 106 51 77 91 24 85 66 INFO: Final dominant points are 31 136 98 53 121 101 55 100 106 51 77 91 24 85 66 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 31 136 98 53 119 101 55 94 104 47 77 85 24 85 66 INFO: Distances between consecutive points are 28 25 27 31 INFO: Selected control points in test subject's space are 39 89 43 48 83 41 49 74 38 46 71 29 36 76 24 INFO: Distances between consecutive points in test subject's space are 11 10 10 12 WARN: Could not find satisfactory control point fit - try 26 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500944 INFO: Points where local peeks in curvature occur are 55 131 93 (curv = 0.144942) 54 119 98 (curv = 0.0503215) 55 102 103 (curv = 0.0703204) 56 96 102 (curv = 0.0763136) 54 84 94 (curv = 0.084076) INFO: Intermediate dominant points are 36 138 86 55 131 93 55 102 103 54 84 94 34 93 67 INFO: Final dominant points are 36 138 86 55 131 93 55 102 103 54 84 94 34 93 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 55 125 96 55 101 103 52 82 88 34 93 67 INFO: Distances between consecutive points are 25 25 24 30 INFO: Selected control points in test subject's space are 41 92 40 49 86 41 49 76 39 48 72 31 40 79 26 INFO: Distances between consecutive points in test subject's space are 10 10 9 12 WARN: Could not find satisfactory control point fit - try 27 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0475605 INFO: Points where local peeks in curvature occur are 55 131 93 (curv = 0.111354) 56 97 103 (curv = 0.0773199) 55 85 96 (curv = 0.0696796) 51 81 88 (curv = 0.0487028) 49 81 80 (curv = 0.0552002) INFO: Intermediate dominant points are 36 138 86 55 131 93 56 97 103 49 81 80 32 93 66 INFO: Final dominant points are 36 138 86 55 131 93 56 97 103 49 81 80 32 93 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 56 125 96 55 102 103 52 82 89 32 93 66 INFO: Distances between consecutive points are 26 24 25 32 INFO: Selected control points in test subject's space are 41 92 40 50 86 41 49 77 39 48 72 31 40 79 26 INFO: Distances between consecutive points in test subject's space are 11 9 9 12 WARN: Could not find satisfactory control point fit - try 28 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0495624 INFO: Points where local peeks in curvature occur are 56 123 97 (curv = 0.117717) 54 118 100 (curv = 0.0632483) 54 94 105 (curv = 0.0797024) 52 86 101 (curv = 0.0916282) 48 84 77 (curv = 0.051318) 35 85 63 (curv = 0.0898769) INFO: Intermediate dominant points are 37 135 81 56 123 97 52 86 101 35 85 63 23 94 52 INFO: Final dominant points are 37 135 81 56 123 97 52 86 101 35 85 63 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 116 100 52 88 102 47 83 75 23 94 52 INFO: Distances between consecutive points are 32 28 28 35 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 46 75 27 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 10 13 WARN: Could not find satisfactory control point fit - try 29 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.050069 INFO: Points where local peeks in curvature occur are 52 121 99 (curv = 0.130207) 54 98 103 (curv = 0.0745749) 53 83 93 (curv = 0.0644416) 46 81 77 (curv = 0.0586908) 42 84 72 (curv = 0.0606397) INFO: Intermediate dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 INFO: Final dominant points are 31 128 93 52 121 99 54 98 103 53 83 93 28 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 93 53 118 99 54 96 103 49 80 84 28 90 70 INFO: Distances between consecutive points are 25 22 25 27 INFO: Selected control points in test subject's space are 39 87 40 48 83 40 49 75 38 47 72 29 38 78 27 INFO: Distances between consecutive points in test subject's space are 10 8 10 11 WARN: Could not find satisfactory control point fit - try 30 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 113 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0516034 INFO: Points where local peeks in curvature occur are 55 126 96 (curv = 0.11575) 55 99 105 (curv = 0.0607377) 52 87 102 (curv = 0.0960767) 48 84 78 (curv = 0.0519289) 34 86 60 (curv = 0.0937957) INFO: Intermediate dominant points are 38 135 83 55 126 96 52 87 102 34 86 60 23 94 52 INFO: Final dominant points are 38 135 83 55 126 96 52 87 102 34 86 60 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 38 135 83 54 115 101 52 86 101 43 83 71 23 94 52 INFO: Distances between consecutive points are 31 29 31 30 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 44 75 26 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 11 11 WARN: Could not find satisfactory control point fit - try 31 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498399 INFO: Points where local peeks in curvature occur are 56 129 94 (curv = 0.150427) 56 96 103 (curv = 0.087756) 53 83 91 (curv = 0.0747506) 45 83 74 (curv = 0.0605071) INFO: Intermediate dominant points are 36 138 86 56 129 94 56 96 103 45 83 74 34 93 67 INFO: Final dominant points are 36 138 86 56 129 94 56 96 103 45 83 74 34 93 67 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 138 86 56 125 96 55 101 103 51 82 85 34 93 67 INFO: Distances between consecutive points are 26 25 26 27 INFO: Selected control points in test subject's space are 41 92 40 50 86 41 49 76 39 47 73 30 40 79 26 INFO: Distances between consecutive points in test subject's space are 11 10 10 10 WARN: Could not find satisfactory control point fit - try 32 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0541027 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.111201) 57 97 104 (curv = 0.0718246) 55 86 101 (curv = 0.0879416) 54 82 96 (curv = 0.0682463) 51 82 83 (curv = 0.0671557) INFO: Intermediate dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 INFO: Final dominant points are 31 131 99 54 114 102 55 86 101 51 82 83 34 79 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 101 57 93 103 51 81 86 34 79 75 INFO: Distances between consecutive points are 27 23 22 20 INFO: Selected control points in test subject's space are 39 87 43 48 82 41 50 74 37 47 72 30 41 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 7 WARN: Could not find satisfactory control point fit - try 33 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0412883 INFO: Points where local peeks in curvature occur are 53 120 102 (curv = 0.070965) 55 97 103 (curv = 0.0526155) 54 91 101 (curv = 0.0534358) 53 88 99 (curv = 0.0540015) 53 84 94 (curv = 0.0477669) 49 80 79 (curv = 0.0741549) INFO: Intermediate dominant points are 50 140 101 53 120 102 53 88 99 49 80 79 33 83 66 INFO: Final dominant points are 50 140 101 53 120 102 53 88 99 49 80 79 33 83 66 WARN: Defaulting to equidistant control points INFO: Selected control points are 50 140 101 54 118 102 55 96 103 51 82 86 33 83 66 INFO: Distances between consecutive points are 22 22 22 27 INFO: Selected control points in test subject's space are 47 90 45 49 82 41 49 75 38 47 73 30 40 76 24 INFO: Distances between consecutive points in test subject's space are 9 8 8 10 WARN: Could not find satisfactory control point fit - try 34 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 94 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0564202 INFO: Points where local peeks in curvature occur are 54 114 102 (curv = 0.10482) 57 97 104 (curv = 0.070647) 55 86 101 (curv = 0.0966388) 52 80 83 (curv = 0.0597643) INFO: Intermediate dominant points are 31 128 99 54 114 102 55 86 101 51 80 81 28 75 75 INFO: Final dominant points are 31 128 99 54 114 102 55 86 101 40 83 71 28 75 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 54 114 102 57 90 103 51 80 82 28 75 75 INFO: Distances between consecutive points are 27 24 24 25 INFO: Selected control points in test subject's space are 39 86 42 49 81 41 50 73 37 47 72 29 38 72 26 INFO: Distances between consecutive points in test subject's space are 11 9 9 9 WARN: Could not find satisfactory control point fit - try 35 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 105 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0466912 INFO: Points where local peeks in curvature occur are 55 124 96 (curv = 0.110999) 54 96 106 (curv = 0.105725) 52 91 104 (curv = 0.0861658) 52 86 100 (curv = 0.0795491) 48 84 77 (curv = 0.0566965) INFO: Intermediate dominant points are 37 135 81 55 124 96 54 96 106 48 84 77 34 93 56 INFO: Final dominant points are 37 135 81 55 124 96 54 96 106 48 84 77 34 93 56 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 118 99 52 91 104 49 84 79 34 93 56 INFO: Distances between consecutive points are 30 28 26 29 INFO: Selected control points in test subject's space are 42 91 38 49 83 40 48 73 37 47 74 28 40 81 23 INFO: Distances between consecutive points in test subject's space are 11 10 9 11 WARN: Could not find satisfactory control point fit - try 36 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0528474 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.104998) 57 93 103 (curv = 0.0841141) 53 82 95 (curv = 0.0849468) 47 82 76 (curv = 0.0588867) INFO: Intermediate dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 INFO: Final dominant points are 31 128 99 52 117 101 57 93 103 53 82 95 34 79 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 53 116 101 57 93 103 51 81 86 34 79 74 INFO: Distances between consecutive points are 25 23 22 21 INFO: Selected control points in test subject's space are 39 86 42 48 82 41 50 74 37 47 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 8 WARN: Could not find satisfactory control point fit - try 37 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.049802 INFO: Points where local peeks in curvature occur are 55 125 96 (curv = 0.112727) 54 97 106 (curv = 0.0935555) 52 91 104 (curv = 0.0859216) 52 87 100 (curv = 0.0903343) 36 86 62 (curv = 0.0867908) INFO: Intermediate dominant points are 37 135 81 55 125 96 54 97 106 36 86 62 23 95 52 INFO: Final dominant points are 37 135 81 55 125 96 54 97 106 36 86 62 23 95 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 37 135 81 54 116 100 52 88 102 46 84 74 23 95 52 INFO: Distances between consecutive points are 32 28 29 34 INFO: Selected control points in test subject's space are 42 91 38 49 82 40 48 72 36 45 75 27 36 82 22 INFO: Distances between consecutive points in test subject's space are 12 11 10 12 WARN: Could not find satisfactory control point fit - try 38 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0523631 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.112716) 57 95 104 (curv = 0.0676929) 55 87 102 (curv = 0.0762004) 53 81 94 (curv = 0.0786657) 52 80 85 (curv = 0.0559462) INFO: Intermediate dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 INFO: Final dominant points are 31 131 99 52 117 101 57 95 104 53 81 94 34 78 74 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 31 131 99 53 116 102 57 92 103 52 80 85 34 78 74 INFO: Distances between consecutive points are 27 24 22 21 INFO: Selected control points in test subject's space are 39 87 43 48 82 41 50 73 37 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 10 7 9 WARN: Could not find satisfactory control point fit - try 39 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0522863 INFO: Points where local peeks in curvature occur are 53 116 101 (curv = 0.135207) 57 98 104 (curv = 0.0875347) 55 84 99 (curv = 0.078809) 52 80 86 (curv = 0.0670164) INFO: Intermediate dominant points are 29 135 101 53 116 101 55 84 99 52 80 86 34 78 74 INFO: Final dominant points are 29 135 101 53 116 101 55 84 99 52 80 86 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 29 135 101 52 118 101 57 95 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 29 24 23 23 INFO: Selected control points in test subject's space are 39 88 44 48 83 41 50 74 38 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 11 10 8 9 WARN: Could not find satisfactory control point fit - try 40 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 109 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0474118 INFO: Points where local peeks in curvature occur are 53 118 100 (curv = 0.0854662) 55 97 105 (curv = 0.0776476) 52 86 101 (curv = 0.0937141) 47 83 76 (curv = 0.0597526) 36 85 63 (curv = 0.0882319) INFO: Intermediate dominant points are 28 134 88 53 118 100 52 86 101 36 85 63 23 94 52 INFO: Final dominant points are 28 134 88 53 118 100 52 86 101 36 85 63 23 94 52 WARN: Defaulting to equidistant control points INFO: Selected control points are 28 134 88 54 115 101 52 86 101 44 83 73 23 94 52 INFO: Distances between consecutive points are 35 29 29 32 INFO: Selected control points in test subject's space are 38 90 40 49 82 40 48 72 36 45 75 26 36 82 22 INFO: Distances between consecutive points in test subject's space are 14 11 11 12 WARN: Could not find satisfactory control point fit - try 41 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0508087 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.0873428) 57 95 104 (curv = 0.0760012) 55 85 101 (curv = 0.103893) 53 80 91 (curv = 0.0543973) 52 80 85 (curv = 0.0536442) INFO: Intermediate dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 INFO: Final dominant points are 31 128 99 53 115 102 55 85 101 52 80 85 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 31 128 99 52 116 101 57 94 104 53 80 87 34 78 74 INFO: Distances between consecutive points are 24 23 22 23 INFO: Selected control points in test subject's space are 39 86 42 48 82 41 50 74 38 48 72 30 40 73 26 INFO: Distances between consecutive points in test subject's space are 10 9 8 9 WARN: Could not find satisfactory control point fit - try 42 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 119 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 15 INFO: Minimum allowable curvature at a dominant point is 0.0425463 INFO: Points where local peeks in curvature occur are 56 92 103 (curv = 0.0785197) 55 87 101 (curv = 0.0897688) 44 77 75 (curv = 0.136841) 38 90 61 (curv = 0.0900768) INFO: Intermediate dominant points are 53 135 99 55 104 103 55 87 101 44 77 75 45 119 43 INFO: Final dominant points are 53 135 99 55 101 103 55 87 101 44 77 75 45 119 43 WARN: Defaulting to equidistant control points INFO: Selected control points are 53 135 99 55 105 102 53 81 92 38 88 62 45 119 43 INFO: Distances between consecutive points are 30 26 34 37 INFO: Selected control points in test subject's space are 48 89 43 49 78 39 48 71 32 42 78 24 45 92 23 INFO: Distances between consecutive points in test subject's space are 12 10 12 14 WARN: Could not find satisfactory control point fit - try 43 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 81 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0476297 INFO: Points where local peeks in curvature occur are 52 120 99 (curv = 0.0766869) 55 97 103 (curv = 0.0852679) 52 81 90 (curv = 0.0591867) 50 81 87 (curv = 0.0561134) 45 81 77 (curv = 0.0570366) 43 83 73 (curv = 0.0611955) INFO: Intermediate dominant points are 52 130 97 54 110 101 55 97 103 43 83 73 27 90 70 INFO: Final dominant points are 52 130 97 54 107 102 55 97 103 43 83 73 27 90 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 52 130 97 54 110 101 54 89 99 46 81 78 27 90 70 INFO: Distances between consecutive points are 20 21 24 22 INFO: Selected control points in test subject's space are 48 87 42 49 80 40 49 73 35 45 73 28 38 78 27 INFO: Distances between consecutive points in test subject's space are 7 9 8 9 WARN: Could not find satisfactory control point fit - try 44 Finding center streamline INFO: Step is 5 voxels WARN: Turning off deviation check for center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0422985 INFO: Points where local peeks in curvature occur are 56 131 101 (curv = 0.0792025) 55 98 104 (curv = 0.0764952) 54 88 99 (curv = 0.0566935) 50 81 80 (curv = 0.0723551) INFO: Intermediate dominant points are 50 144 100 56 131 101 55 98 104 50 81 80 36 82 68 INFO: Final dominant points are 50 144 100 56 131 101 55 98 104 50 81 80 36 82 68 INFO: Selected control points are 50 144 100 55 129 100 55 98 104 50 80 82 36 82 68 INFO: Distances between consecutive points are 16 31 29 20 INFO: Selected control points in test subject's space are 47 92 45 49 86 42 49 75 39 47 72 29 41 75 25 INFO: Distances between consecutive points in test subject's space are 7 11 11 8 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 20.437 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Mar 18 13:19:48 CET 2020 New invocation of trac-all Wed Mar 18 14:14:03 CET 2020 /project/2419116.01/scripts /opt/freesurfer/6.0/bin/trac-all -path -c /project/2419116.01/Freesurfer/001/tracula_out/tracula_config.txt Subject 001 SUBJECTS_DIR /project/2419116.01/Freesurfer/001 FREESURFER_HOME /opt/freesurfer/6.0 Actual FREESURFER_HOME /opt/freesurfer/6.0 build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 84899628 3733484 23701180 42887816 19527012 Swap: 52428796 29839792 22589004 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-13:14:03-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-13:14:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-13:14:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/18-13:14:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-13:14:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/03/18-13:14:04-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/03/18-13:14:05-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: User: ilecam Machine: mentat005.dccn.nl Platform: Linux PlatformVersion: 3.10.0-957.el7.x86_64 CompilerName: GCC CompilerVersion: 40400 New invocation of trac-paths ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 84900548 3731868 23701180 42888512 19525956 Swap: 52428796 29839792 22589004 #------------------------------------- /opt/freesurfer/6.0/bin/trac-paths #------------------------------------- #@# Path reconstruction Wed Mar 18 14:14:05 CET 2020 rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all 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/project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr 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/project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 1 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Done in 144.061 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cst_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6_std.txt Processing pathway 2 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Done in 121.071 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 3 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Done in 111.107 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 4 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Done in 110.058 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 5 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Done in 59.91 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.unc_AS_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5_std.txt Processing pathway 6 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Done in 74.364 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 7 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Done in 24.186 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fminor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 8 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Done in 83.081 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 9 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Success after 6 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Done in 80.358 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 10 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 13.275 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 11 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Done in 106.512 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 12 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 4 INFO: Attempting to perturb control points INFO: Success after 1 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Done in 115.057 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 13 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Done in 45.624 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.cab_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4_std.txt Processing pathway 14 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 3 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Done in 54.027 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 15 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Done in 67.397 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 16 of 18... Initializing MCMC Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Done in 85.31 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/lh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 17 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Done in 105.398 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.txt WARN: Initial start point 47 92 45 is not in start ROI WARN: Replacing with closest point in start ROI (47 91 45) Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.slft_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 18 of 18... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 3 INFO: Attempting to perturb control points INFO: Success after 2 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Done in 89.51 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 84595824 3971588 23675324 42953516 19855816 Swap: 52428796 29840816 22587980 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Priors Wed Mar 18 14:39:45 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.380858.txt --trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 0 49 --rois dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 7 5 --xstr --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.380858.txt --trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 0 49 --rois dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 7 5 --xstr --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: fmajor_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.380858.txt Location of streamline files relative to base: dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 0 49 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 7 5 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 2469 streamlines for straying off mask INFO: Rejected 233 streamlines for reversing direction INFO: Rejected 123 streamlines as length outliers INFO: Have 6950 total streamlines (min/mean/max length: 87/134/166) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 2 streamlines to be excluded Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 2... Matching streamline ends INFO: Have 5076 non-truncated streamlines (min/mean/max length: 87/136/168) INFO: Center of mass of start points: (102+/-7, 38+/-8, 98+/-16) INFO: Center of mass of midpoints: (90+/-3, 90+/-3, 84+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-9, 98+/-17) INFO: Split streamlines into 37 segments Computing path histograms INFO: Total streamline volume is 61291 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 145 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.049381 INFO: Points where local peeks in curvature occur are 106 44 88 (curv = 0.0892097) 116 54 86 (curv = 0.0993473) 116 61 86 (curv = 0.0644371) 100 87 85 (curv = 0.0503332) 91 91 84 (curv = 0.0919606) 84 90 85 (curv = 0.0526852) 61 59 86 (curv = 0.103342) 69 47 90 (curv = 0.0847521) INFO: Intermediate dominant points are 99 39 109 116 54 86 111 71 86 91 91 84 67 75 86 61 59 86 72 38 112 INFO: Final dominant points are 99 39 109 116 54 86 104 83 85 91 91 84 65 72 87 61 59 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 90 91 84 67 75 86 67 49 87 72 38 112 INFO: Distances between consecutive points are 26 25 29 28 26 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 63 76 31 54 70 29 54 61 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 12 11 10 9 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 143 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0500155 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.0815833) 117 56 86 (curv = 0.136918) 96 90 84 (curv = 0.0625254) 89 91 84 (curv = 0.0825719) 61 65 87 (curv = 0.0740974) 62 56 86 (curv = 0.0827118) 67 49 88 (curv = 0.0824247) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 71 86 89 91 84 67 75 87 62 56 86 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 102 85 86 89 91 84 63 69 87 62 56 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 108 45 86 112 69 87 95 90 84 69 78 87 63 54 86 72 38 112 INFO: Distances between consecutive points are 25 24 27 29 25 32 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 28 65 76 31 55 71 30 52 63 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 8 9 11 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 147 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0490525 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0821836) 116 55 86 (curv = 0.129402) 95 90 84 (curv = 0.0613024) 88 91 84 (curv = 0.0869874) 61 60 86 (curv = 0.0762985) 65 52 86 (curv = 0.0869518) INFO: Intermediate dominant points are 99 39 109 116 55 86 111 72 86 88 91 84 65 73 87 65 52 86 72 38 112 INFO: Final dominant points are 99 39 109 116 55 86 102 85 85 88 91 84 62 66 87 65 52 86 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 92 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 30 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0506223 INFO: Points where local peeks in curvature occur are 107 44 88 (curv = 0.0843619) 117 56 86 (curv = 0.137763) 89 91 85 (curv = 0.0854668) 61 63 87 (curv = 0.0904317) 63 54 86 (curv = 0.0804745) INFO: Intermediate dominant points are 99 39 109 117 56 86 111 72 86 89 91 85 61 63 87 67 49 88 72 38 112 INFO: Final dominant points are 99 39 109 117 56 86 103 84 86 89 91 85 61 63 87 71 43 99 72 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 109 46 86 111 71 86 91 91 84 67 75 87 66 50 87 72 38 112 INFO: Distances between consecutive points are 26 25 28 29 25 28 INFO: Selected control points in test subject's space are 67 55 30 71 61 24 72 69 28 64 76 31 54 70 29 54 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 12 9 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0497442 INFO: Points where local peeks in curvature occur are 105 43 89 (curv = 0.10325) 116 55 86 (curv = 0.109404) 89 91 85 (curv = 0.0949491) 60 60 87 (curv = 0.13078) 65 52 87 (curv = 0.0663431) 70 45 94 (curv = 0.0525269) INFO: Intermediate dominant points are 98 38 109 116 55 86 110 72 85 89 91 85 60 60 87 70 45 94 72 39 114 INFO: Final dominant points are 98 38 109 116 55 86 102 84 85 89 91 85 60 60 87 70 45 94 72 39 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 38 109 109 46 86 111 70 85 92 90 84 69 76 87 64 53 87 72 39 114 INFO: Distances between consecutive points are 27 24 28 27 24 31 INFO: Selected control points in test subject's space are 67 54 30 71 61 24 72 69 28 64 76 31 55 70 29 53 63 26 56 54 32 INFO: Distances between consecutive points in test subject's space are 10 9 11 11 8 11 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0477143 INFO: Points where local peeks in curvature occur are 105 42 89 (curv = 0.0636933) 109 46 85 (curv = 0.0675706) 116 56 85 (curv = 0.113) 95 90 84 (curv = 0.0810775) 90 91 84 (curv = 0.0781857) 61 62 87 (curv = 0.0798498) 63 55 86 (curv = 0.0870717) 65 51 87 (curv = 0.075599) 69 47 91 (curv = 0.0615153) INFO: Intermediate dominant points are 99 39 103 116 56 85 109 75 85 95 90 84 65 71 87 63 55 86 72 39 111 INFO: Final dominant points are 99 39 103 116 56 85 107 79 85 95 90 84 63 68 87 63 55 86 72 39 111 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 103 113 50 85 110 73 85 90 91 84 67 75 86 65 52 87 72 39 111 INFO: Distances between consecutive points are 25 23 27 28 23 28 INFO: Selected control points in test subject's space are 67 56 28 72 62 24 71 70 28 63 76 31 54 70 29 53 62 25 56 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 10 11 9 10 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 149 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0497845 INFO: Points where local peeks in curvature occur are 110 44 93 (curv = 0.0756047) 112 50 86 (curv = 0.0996665) 118 64 86 (curv = 0.111878) 107 84 82 (curv = 0.0545738) 80 89 84 (curv = 0.0636875) 62 66 87 (curv = 0.112054) 70 49 87 (curv = 0.0736929) INFO: Intermediate dominant points are 106 41 111 110 44 93 118 64 86 80 89 84 62 66 87 70 49 87 76 38 112 INFO: Final dominant points are 106 41 111 110 44 93 118 64 86 80 89 84 62 66 87 70 49 87 76 38 112 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 41 111 111 49 87 114 73 84 92 90 83 68 77 86 68 53 86 76 38 112 INFO: Distances between consecutive points are 26 24 28 27 24 31 INFO: Selected control points in test subject's space are 70 55 31 72 62 25 73 70 28 64 76 30 54 71 29 54 63 25 58 54 31 INFO: Distances between consecutive points in test subject's space are 9 9 11 11 9 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 146 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0503817 INFO: Points where local peeks in curvature occur are 107 45 86 (curv = 0.0956417) 116 56 85 (curv = 0.128441) 92 90 84 (curv = 0.091457) 82 88 85 (curv = 0.0708764) 61 60 87 (curv = 0.093314) INFO: Intermediate dominant points are 99 39 109 116 56 85 111 70 85 92 90 84 67 74 87 61 60 87 72 42 114 INFO: Final dominant points are 99 39 109 116 56 85 106 79 85 92 90 84 67 74 87 61 60 87 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 99 39 109 107 45 86 112 69 85 91 90 84 68 75 87 66 50 89 72 42 114 INFO: Distances between consecutive points are 25 25 30 28 25 27 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 69 28 64 76 31 54 70 29 54 61 26 56 55 32 INFO: Distances between consecutive points in test subject's space are 8 10 11 12 9 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 144 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0498937 INFO: Points where local peeks in curvature occur are 106 43 88 (curv = 0.0939838) 116 55 85 (curv = 0.1206) 92 90 84 (curv = 0.0923814) 82 88 85 (curv = 0.0708764) 60 61 87 (curv = 0.0968523) 70 45 98 (curv = 0.0510343) INFO: Intermediate dominant points are 98 39 108 116 55 85 111 71 85 92 90 84 60 61 87 70 45 98 72 42 114 INFO: Final dominant points are 98 39 108 116 55 85 105 80 85 92 90 84 60 61 87 70 45 98 72 42 114 WARN: Defaulting to equidistant control points INFO: Selected control points are 98 39 108 108 45 86 112 68 85 92 90 84 70 77 87 63 53 88 72 42 114 INFO: Distances between consecutive points are 25 23 30 26 25 30 INFO: Selected control points in test subject's space are 67 55 30 70 60 24 72 68 27 64 76 31 55 71 30 52 62 26 56 55 32 INFO: Distances between consecutive points in test subject's space are 8 9 12 10 10 10 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 138 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0487474 INFO: Points where local peeks in curvature occur are 105 43 88 (curv = 0.0736768) 109 46 84 (curv = 0.0652874) 115 54 84 (curv = 0.0999097) 115 61 85 (curv = 0.0644986) 92 90 84 (curv = 0.0698463) 85 90 85 (curv = 0.0750864) 61 59 87 (curv = 0.109151) 65 52 87 (curv = 0.0716111) 69 47 91 (curv = 0.0650439) INFO: Intermediate dominant points are 98 39 100 115 54 84 108 76 84 85 90 85 61 59 87 69 46 92 72 39 114 INFO: Final dominant points are 98 39 100 115 54 84 99 87 85 85 90 85 61 59 87 72 42 102 72 39 114 INFO: Selected control points are 98 39 100 115 53 83 101 86 85 82 90 86 61 60 87 73 42 100 72 39 114 INFO: Distances between consecutive points are 28 36 19 37 25 14 INFO: Selected control points in test subject's space are 67 56 27 73 64 24 68 74 30 60 76 31 52 65 27 57 57 28 56 54 32 INFO: Distances between consecutive points in test subject's space are 10 13 8 14 9 5 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 68.444 sec. Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 3 streamlines to be excluded Processing pathway 2 of 2... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0417261 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0653307) 67 155 78 (curv = 0.0707498) 66 144 82 (curv = 0.0916017) INFO: Intermediate dominant points are 70 185 87 65 168 78 66 144 82 71 133 80 81 116 74 INFO: Final dominant points are 70 185 87 67 153 79 66 144 82 77 125 77 81 116 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 185 87 65 168 78 66 150 80 71 133 80 81 116 74 INFO: Distances between consecutive points are 20 18 18 21 INFO: Selected control points in test subject's space are 55 108 48 53 103 42 53 97 40 55 91 37 59 86 32 INFO: Distances between consecutive points in test subject's space are 8 6 7 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0445485 INFO: Points where local peeks in curvature occur are 65 166 81 (curv = 0.109134) 68 160 80 (curv = 0.0879663) 67 144 80 (curv = 0.0813435) 79 125 76 (curv = 0.0551325) INFO: Intermediate dominant points are 72 192 86 65 166 81 67 144 80 74 134 78 81 115 77 INFO: Final dominant points are 72 192 86 65 166 81 67 144 80 79 125 76 81 115 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 192 86 69 174 85 67 154 80 73 136 79 81 115 77 INFO: Distances between consecutive points are 18 21 19 23 INFO: Selected control points in test subject's space are 56 110 49 55 104 45 54 98 40 56 92 37 59 85 33 INFO: Distances between consecutive points in test subject's space are 7 8 7 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 76 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0466508 INFO: Points where local peeks in curvature occur are 70 177 86 (curv = 0.0482193) 66 167 82 (curv = 0.0989591) 68 159 80 (curv = 0.0849014) 66 150 80 (curv = 0.0672404) 67 143 80 (curv = 0.0658386) 79 125 76 (curv = 0.0530125) INFO: Intermediate dominant points are 72 192 86 66 167 82 66 150 80 74 134 78 81 115 76 INFO: Final dominant points are 72 192 86 66 167 82 66 150 80 79 125 76 81 115 76 INFO: Selected control points are 72 192 86 68 167 82 66 150 80 78 126 77 81 115 76 INFO: Distances between consecutive points are 26 17 27 11 INFO: Selected control points in test subject's space are 56 110 49 54 102 43 53 97 40 58 89 35 59 86 32 INFO: Distances between consecutive points in test subject's space are 10 6 11 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 82.725 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Mar 18 14:43:12 CET 2020 /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/fmajor_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7_std.txt Processing pathway 1 of 2... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 1 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Success after 9 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Done in 180.62 sec. Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt WARN: Resized proposal standard deviations to match new number of control points Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 2 of 2... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Reverting to original control points Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 17.863 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 63.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 300.0000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz New invocation of trac-preproc ilecam mentat005.dccn.nl Linux mentat005.dccn.nl 3.10.0-957.el7.x86_64 #1 SMP Thu Nov 8 23:39:32 UTC 2018 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse 118368835 kbytes descriptors 32768 memorylocked 64 kbytes maxproc 4096 maxlocks unlimited maxsignal 513630 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 131520928 84721520 4669196 23690304 42130212 19715764 Swap: 52428796 29847728 22581068 #------------------------------------- /opt/freesurfer/6.0/bin/trac-preproc #------------------------------------- #@# Priors Wed Mar 18 14:47:06 CET 2020 /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.392018.txt --trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 49 --rois dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 5 --xstr --trunc cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_train --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni --out rh.atr_PP_avg33_mni_bbr --slist /tmp/subj33.001.392018.txt --trk dlabel/mni/rh.atr_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 49 --rois dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz --bmask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz --fa /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz --cptdir /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat --ncpts 5 --xstr --trunc sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni Output directory in test subject's space: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff Output base: rh.atr_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.001.392018.txt Location of streamline files relative to base: dlabel/mni/rh.atr_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 49 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 5 Exclude previously chosen center streamlines: 1 Use truncated streamlines: 1 Loading brain mask of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit_FA.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 567 streamlines for straying off mask INFO: Rejected 15 streamlines for reversing direction INFO: Rejected 39 streamlines as length outliers INFO: Have 11391 total streamlines (min/mean/max length: 31/63/90) Loading list of excluded streamlines from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_all.bad.txt INFO: Found 4 streamlines to be excluded Loading segmentation from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /opt/freesurfer/6.0/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 1... Matching streamline ends INFO: Have 5204 non-truncated streamlines (min/mean/max length: 41/71/90) INFO: Center of mass of start points: (68+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-4, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36161 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 69 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0417261 INFO: Points where local peeks in curvature occur are 65 168 78 (curv = 0.0653307) 67 155 78 (curv = 0.0707498) 66 144 82 (curv = 0.0916017) INFO: Intermediate dominant points are 70 185 87 65 168 78 66 144 82 71 133 80 81 116 74 INFO: Final dominant points are 70 185 87 67 153 79 66 144 82 77 125 77 81 116 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 185 87 65 168 78 66 150 80 71 133 80 81 116 74 INFO: Distances between consecutive points are 20 18 18 21 INFO: Selected control points in test subject's space are 55 108 48 53 103 42 53 97 40 55 91 37 59 86 32 INFO: Distances between consecutive points in test subject's space are 8 6 7 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0445485 INFO: Points where local peeks in curvature occur are 65 166 81 (curv = 0.109134) 68 160 80 (curv = 0.0879663) 67 144 80 (curv = 0.0813435) 79 125 76 (curv = 0.0551325) INFO: Intermediate dominant points are 72 192 86 65 166 81 67 144 80 74 134 78 81 115 77 INFO: Final dominant points are 72 192 86 65 166 81 67 144 80 79 125 76 81 115 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 192 86 69 174 85 67 154 80 73 136 79 81 115 77 INFO: Distances between consecutive points are 18 21 19 23 INFO: Selected control points in test subject's space are 56 110 49 55 104 45 54 98 40 56 92 37 59 85 33 INFO: Distances between consecutive points in test subject's space are 7 8 7 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 63 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0355914 INFO: Points where local peeks in curvature occur are 64 167 78 (curv = 0.0674641) 66 156 78 (curv = 0.0417526) 66 142 82 (curv = 0.0879522) INFO: Intermediate dominant points are 69 182 81 64 167 78 66 142 82 72 132 80 81 117 74 INFO: Final dominant points are 69 182 81 64 167 78 66 142 82 77 125 77 81 117 74 INFO: Selected control points are 69 182 81 65 166 77 67 143 82 76 126 78 81 117 74 INFO: Distances between consecutive points are 17 24 20 11 INFO: Selected control points in test subject's space are 54 107 45 53 103 41 54 94 39 57 89 35 59 87 32 INFO: Distances between consecutive points in test subject's space are 6 9 7 4 Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 76.51 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Wed Mar 18 14:48:57 CET 2020 /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_paths --outdir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dwi /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz --grad /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs --bval /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals --mask /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz --roi2 /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz --reg /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat --init /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt --nprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all --lprior /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all --seg /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 7500 --nu 0 --nk 5 --sdp /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Output directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr DWIs: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Gradients: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs B-values: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Mask: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz BEDPOST directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Max number of tracts per voxel: 2 Tract volume fraction threshold: 0.05 Initial control point file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt End ROI 1: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz End ROI 2: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Neighbor aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all Neighbor aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all Neighbor aseg prior set: 14 Local aseg prior: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all Local aseg label ID list: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all Local aseg prior set: 15 Segmentation map: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz DWI-to-atlas affine registration: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Number of burn-in samples: 200 Number of post-burn-in samples: 7500 Keep every: 5-th sample Update proposal every: 0-th sample Initial proposal SD file: /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Loading DWIs from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dwi.nii.gz Loading mask from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/aparc+aseg_mask.bbr.nii.gz Loading BEDPOST parameter samples from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri.bedpostX Loading b-values from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvals Loading gradients from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/bvecs INFO: Found 7 baseline images (b = 0) out of a total of 68 frames INFO: Found 86724 voxels in brain mask INFO: Resolution of DWI space relative to base space is (1, 1, 1) Loading atlas reference volume from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading affine registration from /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/xfms/diff2mni.bbr.mat Loading segmentation map from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/aparc+aseg.nii.gz Creating output directory /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end1_dil.nii.gz Loading end ROI from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_end2_dil.nii.gz Loading control points from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_0_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_-1_0.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_0_0_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_1_-1_-1.txt Loading nearest neighbor prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsnnids_all_-1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_0_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_0_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_-1_0.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_-1_0.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_0_0_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_0_0_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_1_-1_-1.txt Loading local prior from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsprior_all_-1_-1_-1.txt with label IDs from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/mni/rh.atr_PP_avg33_mni_bbr_fsids_all_-1_-1_-1.txt Loading initial proposal SD's from /project/2419116.01/Freesurfer/001/tracula_out/001/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5_std.txt Processing pathway 1 of 1... Initializing MCMC INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 0 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Path from initial control points is not entirely in white matter INFO: in segment 2 INFO: Attempting to perturb control points INFO: Success after 5 perturbation(s) Running MCMC burn-in jumps Running MCMC main jumps Writing output files to /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Done in 81.423 sec. dmri_paths done fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 68.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz -thr 63.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 82.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz -thr 105.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 119.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz -thr 79.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 63.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 109.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz -thr 81.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 118.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz -thr 102.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 183.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz -thr 160.8000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 44.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz -thr 83.6000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.2000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/tmp.nii.gz fslmaths /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz -thr 78.4000000 /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz rm -rf /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/tmp.nii.gz /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.cst Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cst_AS_avg33_mni_bbr... Done in 0.409 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cst --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.cst Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cst_AS_avg33_mni_bbr... Done in 0.4 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.ilf Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ilf_AS_avg33_mni_bbr... Done in 0.399 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ilf --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.ilf Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ilf_AS_avg33_mni_bbr... Done in 0.391 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.unc Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.unc_AS_avg33_mni_bbr... Done in 0.387 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.unc --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.unc Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.unc_AS_avg33_mni_bbr... Done in 0.382 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fmajor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fmajor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: fmajor Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fmajor_PP_avg33_mni_bbr... Done in 0.402 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fminor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path fminor --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: fminor Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/fminor_PP_avg33_mni_bbr... Done in 0.384 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.atr Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.atr_PP_avg33_mni_bbr... Done in 0.385 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.atr --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.atr Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.atr_PP_avg33_mni_bbr... Done in 0.385 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.ccg Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.ccg_PP_avg33_mni_bbr... Done in 0.384 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.ccg --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.ccg Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.ccg_PP_avg33_mni_bbr... Done in 0.385 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.cab Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.cab_PP_avg33_mni_bbr... Done in 0.388 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.cab --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.cab Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.cab_PP_avg33_mni_bbr... Done in 0.386 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.slfp Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slfp_PP_avg33_mni_bbr... Done in 0.387 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slfp --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.slfp Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slfp_PP_avg33_mni_bbr... Done in 0.394 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path lh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: lh.slft Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/lh.slft_PP_avg33_mni_bbr... Done in 0.402 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_pathstats --intrc /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr --dtbase /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit --path rh.slft --subj 001 --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt --outvox /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input tracula directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr Input DTI fit base: /project/2419116.01/Freesurfer/001/tracula_out/001/dmri/dtifit Pathway name: rh.slft Subject name: 001 Output file for overall measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.overall.txt Output file for voxel-by-voxel measures: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr/pathstats.byvoxel.txt Lower threshold for probability: 0.200000 Computing statistics on /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/rh.slft_PP_avg33_mni_bbr... Done in 0.396 sec. dmri_pathstats done /opt/freesurfer/6.0/bin/dmri_mergepaths --indir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz --ctab /opt/freesurfer/6.0/FreeSurferColorLUT.txt --thresh .2 cwd /project/2419116.01/scripts cmdline /opt/freesurfer/6.0/bin/dmri_mergepaths --indir /project/2419116.01/Freesurfer/001/tracula_out/001/dpath --in fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz --out /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz --ctab /opt/freesurfer/6.0/FreeSurferColorLUT.txt --thresh .2 sysname Linux hostname mentat005.dccn.nl machine x86_64 user ilecam Input directory: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath Input files: fmajor_PP_avg33_mni_bbr/path.pd.nii.gz fminor_PP_avg33_mni_bbr/path.pd.nii.gz lh.atr_PP_avg33_mni_bbr/path.pd.nii.gz lh.cab_PP_avg33_mni_bbr/path.pd.nii.gz lh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz lh.cst_AS_avg33_mni_bbr/path.pd.nii.gz lh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz lh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz lh.slft_PP_avg33_mni_bbr/path.pd.nii.gz lh.unc_AS_avg33_mni_bbr/path.pd.nii.gz rh.atr_PP_avg33_mni_bbr/path.pd.nii.gz rh.cab_PP_avg33_mni_bbr/path.pd.nii.gz rh.ccg_PP_avg33_mni_bbr/path.pd.nii.gz rh.cst_AS_avg33_mni_bbr/path.pd.nii.gz rh.ilf_AS_avg33_mni_bbr/path.pd.nii.gz rh.slfp_PP_avg33_mni_bbr/path.pd.nii.gz rh.slft_PP_avg33_mni_bbr/path.pd.nii.gz rh.unc_AS_avg33_mni_bbr/path.pd.nii.gz Output file: /project/2419116.01/Freesurfer/001/tracula_out/001/dpath/merged_avg33_mni_bbr.mgz Color table file: /opt/freesurfer/6.0/FreeSurferColorLUT.txt Lower threshold for display: 0.200000 Merging volume 1 of 18... Threshold: 34.2 Name: Corpus Callosum Forceps Major Merging volume 2 of 18... Threshold: 51 Name: Corpus Callosum Forceps Minor Merging volume 3 of 18... Threshold: 54.4 Name: Left Anterior Thalamic Radiation Merging volume 4 of 18... Threshold: 118.8 Name: Left Cingulum - Angular Bundle Merging volume 5 of 18... Threshold: 78.8 Name: Left Cingulum - Cingulate Gyrus Merging volume 6 of 18... Threshold: 42.4 Name: Left Corticospinal Tract Merging volume 7 of 18... Threshold: 64.4 Name: Left Inferior Longitudinal Fasciculus Merging volume 8 of 18... Threshold: 34 Name: Left Superior Longitudinal Fasciculus - Parietal Merging volume 9 of 18... Threshold: 46.4 Name: Left Superior Longitudinal Fasciculus - Temporal Merging volume 10 of 18... Threshold: 59.6 Name: Left Uncinate Fasciculus Merging volume 11 of 18... Threshold: 54.6 Name: Right Anterior Thalamic Radiation Merging volume 12 of 18... Threshold: 127 Name: Right Cingulum - Angular Bundle Merging volume 13 of 18... Threshold: 80.2 Name: Right Cingulum - Cingulate Gyrus Merging volume 14 of 18... Threshold: 42.2 Name: Right Corticospinal Tract Merging volume 15 of 18... Threshold: 74.4 Name: Right Inferior Longitudinal Fasciculus Merging volume 16 of 18... Threshold: 43 Name: Right Superior Longitudinal Fasciculus - Parietal Merging volume 17 of 18... Threshold: 42.6 Name: Right Superior Longitudinal Fasciculus - Temporal Merging volume 18 of 18... Threshold: 49.2 Name: Right Uncinate Fasciculus Done in 8.722 sec. dmri_mergepaths done #------------------------------------- trac-paths finished without error at Wed Mar 18 14:51:09 CET 2020