why are they so bright? Are they that way before intensity normalization (e.g. in the orig.mgz)?

On Mon, 21 Oct 2013, Jonathan Holt wrote:

FS experts,
Freesurfer has been omitting extremely bright/intense white and grey matter voxels (avg intensity ~150).
Mostly this happens in areas that should be encompassed by the surfaces. Is there a way to tell recon-all
to include these areas?

I fear it may believe they are dura because of the similar intensity values.

jon 

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