I&#39;ve just figured that out.....the storage device icon is on the desktop but the actual path to the storage device is different....very silly<div><br></div><div>:-)</div><div><br></div><div>sorry for bothering....<br><br>
<div class="gmail_quote">2012/10/2 pietro de rossi <span dir="ltr">&lt;<a href="mailto:derossi05@gmail.com" target="_blank">derossi05@gmail.com</a>&gt;</span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
Ok, this is what happened after I moved the folders to a storage device (MacintoshHD2)<div><br></div><div><div>[HG-01881507-DM7:~] aitkenww% setenv SUBJECTS_DIR /users/aitkenww/desktop/MacIntoshHD2/PROC_WILL</div><div>[HG-01881507-DM7:~] aitkenww% cd $SUBJECTS_DIR</div>


<div>/users/aitkenww/desktop/MacIntoshHD2/PROC_WILL: No such file or directory.</div><div>[HG-01881507-DM7:~] aitkenww% tksurfer 348 lh inflated</div><div>subject is 348</div><div>hemi    is lh</div><div>surface is inflated</div>


<div>surfer: current subjects dir: /users/aitkenww/desktop/MacIntoshHD2/PROC_WILL</div><div>Checking 348</div><div>ERROR: cannot find subject 348 in /users/aitkenww/desktop/MacIntoshHD2/PROC_WILL</div><div>[HG-01881507-DM7:~] aitkenww% tksurfer 348 lh inflated</div>


<div>subject is 348</div><div>hemi    is lh</div><div>surface is inflated</div><div>surfer: current subjects dir: /users/aitkenww/desktop/MacIntoshHD2/PROC_WILL</div><div>Checking 348</div><div>ERROR: cannot find subject 348 in /users/aitkenww/desktop/MacIntoshHD2/PROC_WILL</div>
<div><div class="h5">

<br><div class="gmail_quote">2012/10/2 Bruce Fischl <span dir="ltr">&lt;<a href="mailto:fischl@nmr.mgh.harvard.edu" target="_blank">fischl@nmr.mgh.harvard.edu</a>&gt;</span><br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">


Hi Pietro<br>
<br>
you should be able to. When you say you can&#39;t run tksurfer/tkmedit what happens? Can you send us screen output?<br>
<br>
Bruce<div><br>
On Tue, 2 Oct 2012, pietro de rossi wrote:<br>
<br>
</div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex"><div>
Dear FreeSurfer experts,<br>
I&#39;m processing scans on three different computers and I would like to know<br>
if it is possible to collect all the processed scans together in order to<br>
analyze data on just one computer.<br>
<br>
I realized that even moving the processed subjects folders to another folder<br>
within the same computer (even if I set the new folder as the SUBJECTS_DIR)<br>
I&#39;m not able to run tksurfer and tkmedit for those subjects....am I doing<br>
anything wrong? is it just that once you&#39;ve processed the scans the<br>
proc_folders cannot be moved?<br>
<br>
thanks,<br>
<br>
Pietro<br>
<br>
--<br>
Pietro De Rossi, MD<br>
------------------------------<u></u>-------<br>
Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento<br>
NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale<br>
Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>
<br>
NESMOS Department (Neurosciences, Mental Health and Sensory Functions),<br></div>
School of Medicine and Psychology, Sapienza University, Sant?Andrea Hospital,<div><br>
Via di Grottarossa 1035-1039, 00189 Rome, Italy<br>
<br>
Neurobehavioral Clinical Research Section, Social and Behavioral Research<br>
Branch, National Human Genome Research Institute (NHGRI), National<br>
Institutes of Health (NIH), Bethesda, Maryland 20892, USA<br>
<br>
<br>
</div></blockquote>
<br>
<br>
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</blockquote></div><br><br clear="all"><div><br></div>-- <br></div></div><span style="border-collapse:collapse;color:rgb(34,34,34);font-size:13px"><div style="font-family:arial,sans-serif"><span><font color="#222222">Pietro De Rossi</font></span>, MD</div>


<div style="font-family:arial,sans-serif"><div><div class="h5">-------------------------------------<br><span style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>


</span><span lang="EN-GB" style="font-size:6.5pt;font-family:&#39;Arial Narrow&#39;"><br></span></div></div><span lang="EN-GB" style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy</span></div>


</span><div class="im"><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><br>


</span></div>Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA</span><br>



</div></div>
</blockquote></div><br><br clear="all"><div><br></div>-- <br><span style="border-collapse:collapse;color:rgb(34,34,34);font-size:13px"><div style="font-family:arial,sans-serif"><span><font color="#222222">Pietro De Rossi</font></span>, MD</div>
<div style="font-family:arial,sans-serif">-------------------------------------<br><span style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant&#39;Andrea, Via di Grottarossa 1035-1039, 00189 Roma<br>
</span><span lang="EN-GB" style="font-size:6.5pt;font-family:&#39;Arial Narrow&#39;"><br></span><span lang="EN-GB" style="font-size:10pt;font-family:&#39;Arial Narrow&#39;">NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant’Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy</span></div>
</span><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><div><span style="border-collapse:collapse;color:rgb(34,34,34);font-family:&#39;Arial Narrow&#39;;font-size:13px"><br>
</span></div>Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA</span><br>

</div>