Bruce, No i did not, but the acquisition was made with a voxel of 0.8^3mm, that's why i put the -cm flag to the autorecon1, but i didn't made any other change, is there any way to normalize the size of the image, without recon?

Thanks, Gabriel

> Date: Wed, 2 Jun 2010 15:12:21 -0400
> From: fischl@nmr.mgh.harvard.edu
> To: gabriellbk@hotmail.com
> CC: nicks@nmr.mgh.harvard.edu; reuter@mit.edu; freesurfer@nmr.mgh.harvard.edu
> Subject: RE: [Freesurfer] autorecon2 error
>
> Hi Gabriel,
>
> did you do anything "nonstandard" to your aseg volume or anywhere else in
> the stream? The aseg should be 256^3 1imm iso, but for some reason it's
> not.
>
> Bruce
> On Wed, 2 Jun 2010, Gabriel Go.Es. wrote:
>
> >
> > Thank you
> > I redownloaded the mri_ca_label file and worked, it seems that gets corrupted when donwloading, but now it appears a new error, from
> > the autorecon2, any idea???
> >
> >
> >
> > #@# Intensity Normalization2 Wed Jun 2 14:58:57 CEST 2010
> >
> > /root/trabajo/freesurfer/subjects/T1_GE1/mri
> >
> >
> >
> > mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz
> >
> >
> >
> > using segmentation for initial intensity normalization
> >
> > reading from norm.mgz...
> >
> > mri_normalize: aseg volume aseg.mgz must be conformed
> >
> > using MR volume brainmask.mgz to mask input volume...
> >
> > unconformed source detected - conforming...
> >
> > Linux localhost.localdomain 2.6.9-34.ELsmp #1 SMP Thu Mar 9 06:23:23 GMT
> > 2006 x86_64 x86_64 x86_64 GNU/Linux
> >
> >
> >
> > recon-all exited with ERRORS at Wed Jun 2 14:59:06 CEST 2010
> >
> >
> >
> > Best, Gabriel
> >
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