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Hi Doug,

I'm about to start edits on subjects that have been re-processed in 7.2 using the -fill flag. Before doing so, can you clarify/verify that we edit the new filled.mgz just the same as we would the wm.mgz (aside from the fill values being different for left vs right hemispheres)?

I have also noticed a few spots where the filled.mgz extends beyond the wm surface from the wm.mgz file (see attached). Should these be edited to match the wm.mgz?

Thanks!

Corinna

On Wed, Jul 21, 2021 at 1:49 PM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

Yes, just run recon-all with the -fill option to regenerated the filled.mgz (it will be the same filled.mgz but it will have a colortable embedded; it will also create filled.auto.mgz to help keep track of the edits). The just edit filled.mgz and proceed as normal. When you edit, make sure you use the right brush value depending on whether you are editing the left or right subcortical mass.

On 7/21/2021 1:43 PM, Aaron Tanenbaum wrote:

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Read the release notes.  Can I with the new version run a recon-all over processed 7.1.1.  I am interested in the ability to edit filled.mgz and applying this to 7.1.1 recons.

On Mon, Jul 19, 2021 at 5:46 PM Douglas N. Greve <dgreve@mgh.harvard.edu> wrote:

We are  please to announce version 7.2. Mostly bug fixes and
behind-the-scenes enhancements. But there are a few new goodies and one
new "known issue" about defacing. Check out
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doug


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