what about the probabilistic brain defacing?


Thanks


On Nov 10, 2005, at 12:25 PM, Bruce Fischl wrote:


<excerpt>

if you use surface recons



Dale, A.M. and M.I. Sereno (1993) Improved localization of cortical

activity by combining EEG and MEG with MRI cortical surface
reconstruction:

A linear approach. Journal of Cognitive Neuroscience 5:162-176.


Segonne F, Dale, AM, Busa E, Glessner M, Salvolini U, Hahn HK,

Fischl B, A Hybrid Approach to the Skull-Stripping Problem in MRI.

NeuroImage, 22,  pp. 1160-1075, 2004


Dale, A.M., Fischl, Bruce, Sereno, M.I., (1999). Cortical Surface-Based

Analysis I: Segmentation and Surface Reconstruction. NeuroImage

9(2):179-194


Fischl, Bruce, Sereno, M.I., Dale, A.M., (1999). Cortical Surface-Based

Analysis II: Inflation, Flattening, and a Surface-Based Coordinate
System.

NeuroImage 9(2):195-207


Fischl, Bruce, Liu, Arthur, and Dale, A.M., (2001). Automated Manifold

Surgery: Constructing Geometrically Accurate and Topologically Correct

Models of the Human Cerebral Cortex. IEEE Transactions on Medical
Imaging,

20(1):70-80



if you do inter-subject spherical averaging


Fischl, Bruce, Sereno, M.I., Tootell, R.B.H., and Dale, A.M., (1999).

High-resolution inter-subject averaging and a coordinate system for the

cortical surface. Human Brain Mapping, In Press



if you do a thickness study



Fischl, Bruce, and Dale, A.M., (2000). Measuring the Thickness of the
Human

Cerebral Cortex from Magnetic Resonance Images. Proceedings of the
National

Academy of Sciences, 97:11044-11049.



if you use cortical parcellations



Fischl B, van der Kouwe A, Destrieux C, Halgren E, Ségonne F,

Salat DH, Busa E, Seidman LJ, Goldstein J, Kennedy D, Caviness V,
Makris

N, Rosen B, Dale, AM Automatically Parcellating the Human Cerebral

Cortex. Cerebral Cortex, 2004; 14:11-22.




if you do subcortical segmentation


Fischl B, Salat DH, van der Kouwe AJW, Makris N, Ségonne F, Dale

AM. Sequence-Independent  Segmentation of Magnetic Resonance Images.

NeuroImage 23 Suppl 1, S69-84.


Fischl B, Salat D, Busa E, Albert M, Dieterich M, Haselgrove C,

van der Kouwe A, Killiany R, Kennedy D, Klaveness S, Montillo A, Makris

N, Rosen B, Dale A.M.. Whole brain segmentation. Automated labeling of

neuroanatomical structures in the human brain. Neuron. 2002; 33(3):

341-355.






<excerpt>

Hi All,

 If I wanted to reference freesurfer, what would the appropriate
reference be now that the "manual" is now a wiki?


Thanks,

Tracy


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</excerpt></excerpt><fontfamily><param>Courier</param><x-tad-bigger>Tracy
Wang

Research Assistant

Cognitive Neuroscience Laboratory


Washington University 

Department of Psychology, Campus Box 1125

One Brookings Drive

St. Louis MO 63130-4899

314-935-5019

</x-tad-bigger><color><param>9999,0000,0000</param><x-tad-bigger>twang@artsci.wustl.edu</x-tad-bigger></color><x-tad-bigger>

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