YOu can try running mris_remove_intersection (or something like that)

On 1/11/2020 12:48 PM, Davide Momi wrote:

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Dear Freesurfer expert, 

I am working with bem model and I have created the outer and the inner skull. Unfortunately, for few subjects the two surfaces intersect each other (see attached). I've tried to edit it manually but I had hard time in figuring it out. Could you please help me with this?

thanks 

Dave 

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