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The subcortical structures do look okay to me. 

-Laurel
From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Douglas N. Greve <dgreve@mgh.harvard.edu>
Sent: Monday, March 8, 2021 9:48 AM
To: freesurfer@nmr.mgh.harvard.edu <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Aseg missing frontal portions - subcortical okay?
 
Hard to say from a description. If you look at the subcortical structures, do they look like they are accurate?

On 3/1/2021 4:36 PM, Laurel Quinlan wrote:

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Hi Freesurfer Team,

I am checking over the aseg on one of my subjects and notice that there are large portions of cortex missing anteriorly. The omission does not seem to affect any subcortical structures. Do you think that the subcortical values extracted from this subject are okay, even if there is cortex missing?

Thanks!

Laurel Quinlan
Research Specialist
Center for Healthy Minds
University of Wisconsin-Madison


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