External Email - Use Caution
Hi,
Okay that is great thank you I will check it out but I have been able to run free surfer fab for a lot of subject data so I wondered if the resampled t2 had anything to do with this as I was able
to run it before. Do you think it would still be a compatibility issue?
Best wishes
Samantha
From: Huang, Yujing <YHUANG43@mgh.harvard.edu>
Sent: 14 July 2025 16:15
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Re: Freesurfer output. Segmentation fault (core dumped) during parcellation step
|
You don't often get email from
yhuang43@mgh.harvard.edu.
Learn why this is important |
It looks like you ran into system compatibility issues. Your recon-all.log shows that you are running centos6 release on Linux 9 machine. See this thread for related discussions
https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg74552.html
Yujing
From: Samantha Hendry <shendry2@ed.ac.uk>
Sent: Friday, July 11, 2025 1:54 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] Re: Freesurfer output. Segmentation fault (core dumped) during parcellation step
External Email - Use Caution
Hi,
That’s is great thank you I will check it out sorry I think I gave you the wrong scripts here is a different one from this year fi this would make anymore sense thankyou!
😊
Best wishes
Samantha
From: fsbuild <fsbuild@contbay.com>
Sent: 10 July 2025 22:16
To: freesurfer@nmr.mgh.harvard.edu
Subject: [Freesurfer] Re: Freesurfer output. Segmentation fault (core dumped) during parcellation step
External Email - Use Caution
This posting indicates that changing the path to ./stats from ../stats got rid of a segmentation fault. I would at least check that all paths in the arguments ro mris_anatomical_stats are correct though.
But I don’t see the error in the recon -all log you sent which is apparently from May 2020 showing Freesurfer 6.0.0 is being run on RedHat Enterprise Linux 7.5.
- R.