Hi Bruce,

what I really need is to obtain several labels that are only included in the aparc+aseg, not for each subject but for the entire sample. My goal is to use these labels (ROIs) in VBM analysis after they are trasformed to volume and further registered to MNI. To this aim, I though to obtain first the fsaverage subject from my sample, run the recon-all in that fsaverage, and finally obtain the labels of interest. Is there another way to proceed with this?

Thank you in advance.

Best,

Jose

El mar., 12 mar. 2019 a las 14:55, Bruce Fischl (<fischl@nmr.mgh.harvard.edu>) escribió:

Hi Jose

can you clarify what you mean by "...to get all the labels that are
obtained in each individual subject." You almost certainly don't need to
recon fsaverage to do this, but I'm not sure exactly what you mean

cheers
Bruce

On Tue, 12
Mar 2019, Laboratorio de Neurociencia Funcional wrote:

>
> External Email - Use Caution
>
> Dear Freesurfers,
>
> I would like to apply recon-all to the fsaverage subject of my sample to get all the labels that are
> obtained in each individual subject. However, it is not possible because my average subject doesn't
> contain the file /orig/001.mgz required to run the recon-all. Could you help me to handle this
> issue?
>
> Many thanks in advance.
>
> Best regards,
> Jose
>
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