mri_glmfit-sim --glmdir ./rh.38sb_score.dods.glmdir --no-sim mc-z.neg.3 --cwpvalthresh 0.5 cmdline mri_glmfit --y rh.38sb_score.10.mgh --fsgd 38sb_score.fsgd dods --C 38sb_score-dods.mtx --surf fsaverage rh --cortex --glmdir rh.38sb_score.dods.glmdir SURFACE: fsaverage rh log file is ./rh.38sb_score.dods.glmdir/mc-z.neg.3.mri_glmfit-sim.log cd /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/glm /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/bin/mri_glmfit-sim --glmdir ./rh.38sb_score.dods.glmdir --no-sim mc-z.neg.3 --cwpvalthresh 0.5 $Id: mri_glmfit-sim,v 1.36.2.5 2012/10/01 22:31:37 greve Exp $ Wed Feb 26 14:35:12 CST 2014 Linux centos2 2.6.18-308.20.1.el5xen #1 SMP Tue Nov 13 11:03:56 EST 2012 x86_64 x86_64 x86_64 GNU/Linux psylab16 setenv SUBJECTS_DIR /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects FREESURFER_HOME /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer Original mri_glmfit command line: cmdline mri_glmfit --y rh.38sb_score.10.mgh --fsgd 38sb_score.fsgd dods --C 38sb_score-dods.mtx --surf fsaverage rh --cortex --glmdir rh.38sb_score.dods.glmdir DoSim = 0 UseCache = 0 DoPoll = 0 DoPBSubmit = 0 DoBackground = 0 DiagCluster = 0 gd2mtx = dods fwhm = 14.015189 mri_surfcluster --in ./rh.38sb_score.dods.glmdir/38sb_score-dods/sig.mgh --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j001-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j002-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j003-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j004-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j005-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j006-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j007-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j008-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j009-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j010-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j011-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j012-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j013-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j014-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j015-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j016-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j017-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j018-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j019-38sb_score-dods.csd --csd ./rh.38sb_score.dods.glmdir/csd/mc-z.neg.3.j020-38sb_score-dods.csd --mask ./rh.38sb_score.dods.glmdir/mask.mgh --cwsig ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.cluster.mgh --vwsig ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.voxel.mgh --sum ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.cluster.summary --ocn ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh --oannot ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.annot --annot aparc --csdpdf ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.pdf.dat --cwpvalthresh 0.5 --o ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.masked.mgh --no-fixmni --surf white Creating CDFs from CSD files csd->threshsign = -1 thsign = neg, id = -1 version $Id: mri_surfcluster.c,v 1.51.2.3 2012/05/31 22:10:05 greve Exp $ hemi = rh srcid = ./rh.38sb_score.dods.glmdir/38sb_score-dods/sig.mgh srcsubjid = fsaverage srcsurf = white srcframe = 0 thsign = neg thmin = 3 thmax = -1 fdr = -1 minarea = 0 xfmfile = talairach.xfm nth = -1 outid = ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.masked.mgh MGH ocnid = ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh MGH sumfile = ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.cluster.summary subjectsdir = /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects FixMNI = 0 Found 149926 vertices in mask Found 149926 vertices in mask Found 149926 points in clabel. ------------- XFM matrix (RAS2RAS) --------------- /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/mri/transforms/talairach.xfm 1.000 0.000 0.000 0.000; 0.000 1.000 0.000 0.000; 0.000 0.000 1.000 0.000; 0.000 0.000 0.000 1.000; ---------------------------------------------------- Reading source surface /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/surf/rh.white Done reading source surface Reading annotation /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/fsaverage/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Computing metric properties Loading source values number of voxels in search space = 149926 Done loading source values (nvtxs = 163842) overall max = 2.41955 at vertex 93589 overall min = -5.2195 at vertex 4418 surface nvertices 163842 surface area 65020.929688 surface area 65020.765625 Computing voxel-wise significance CSDpvalMaxSigMap(): found 2222/163842 above 0 Adjusting threshold for 1-tailed test. If the input is not a -log10(p) volume, re-run with --no-adjust. Searching for Clusters ... thmin=3.000000 (2.698970), thmax=-1.000000 (-1), thsignid=-1, minarea=0.000000 Found 9 clusters Max cluster size 123.432686 Pruning by CW P-Value 0.5 Saving thresholded output to ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.masked.mgh Saving cluster numbers to ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh Saving cluster pval ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.cluster.mgh Constructing output annotation Writing annotation ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.annot mri_segstats --seg ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh --exclude 0 --i /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/glm/rh.38sb_score.10.mgh --avgwf ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.931 $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --seg ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh --exclude 0 --i /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/glm/rh.38sb_score.10.mgh --avgwf ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.y.ocn.dat --sum /tmp/mri_glmfit-sim.junk.931 sysname Linux hostname centos2 machine x86_64 user psylab16 UseRobust 0 Loading ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.sig.ocn.mgh Loading /mnt/sdb1/psylab16/BACKUP/freesurfer/freesurfer/subjects/glm/rh.38sb_score.10.mgh Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 5 segmentations Computing statistics for each segmentation 1 1 226 226.000 2 2 133 133.000 3 3 84 84.000 4 4 110 110.000 Reporting on 4 segmentations Computing spatial average of each frame 0 1 2 3*** glibc detected *** mri_segstats: malloc(): memory corruption: 0x2e61e968 *** ======= Backtrace: ========= /lib/libc.so.6[0x9e11dd] /lib/libc.so.6(__libc_malloc+0x67)[0x9e2d97] /lib/libc.so.6[0x9cf4cf] /lib/libc.so.6(fopen64+0x2c)[0x9d1a7c] mri_segstats[0x80536cd] /lib/libc.so.6(__libc_start_main+0xdc)[0x98ce9c] mri_segstats(__gxx_personality_v0+0x1c9)[0x804f791] ======= Memory map: ======== 00958000-00973000 r-xp 00000000 fd:00 60785448 /lib/ld-2.5.so 00973000-00974000 r-xp 0001a000 fd:00 60785448 /lib/ld-2.5.so 00974000-00975000 rwxp 0001b000 fd:00 60785448 /lib/ld-2.5.so 00977000-00acb000 r-xp 00000000 fd:00 60784655 /lib/libc-2.5.so 00acb000-00acc000 ---p 00154000 fd:00 60784655 /lib/libc-2.5.so 00acc000-00ace000 r-xp 00154000 fd:00 60784655 /lib/libc-2.5.so 00ace000-00acf000 rwxp 00156000 fd:00 60784655 /lib/libc-2.5.so 00acf000-00ad2000 rwxp 00acf000 00:00 0 00ad4000-00add000 r-xp 00000000 fd:00 60784725 /lib/libcrypt-2.5.so 00add000-00ade000 r-xp 00008000 fd:00 60784725 /lib/libcrypt-2.5.so 00ade000-00adf000 rwxp 00009000 fd:00 60784725 /lib/libcrypt-2.5.so 00adf000-00b06000 rwxp 00adf000 00:00 0 00b22000-00b2d000 r-xp 00000000 fd:00 60784686 /lib/libgcc_s-4.1.2-20080825.so.1 00b2d000-00b2e000 rwxp 0000a000 fd:00 60784686 /lib/libgcc_s-4.1.2-20080825.so.1 00c68000-00d48000 r-xp 00000000 fd:00 56176146 /usr/lib/libstdc++.so.6.0.8 00d48000-00d4c000 r-xp 000df000 fd:00 56176146 /usr/lib/libstdc++.so.6.0.8 00d4c000-00d4d000 rwxp 000e3000 fd:00 56176146 /usr/lib/libstdc++.so.6.0.8 00d4d000-00d53000 rwxp 00d4d000 00:00 0 00d72000-00d84000 r-xp 00000000 fd:00 60784662 /lib/libz.so.1.2.3 00d84000-00d85000 rwxp 00011000 fd:00 60784662 /lib/libz.so.1.2.3 08048000-08817000 r-xp 08048000 00:00 0 08817000-2e63b000 rwxp 08817000 00:00 0 [heap] f6300000-f6321000 rwxp f6300000 00:00 0 f6321000-f6400000 ---p f6321000 00:00 0 f64b5000-f7e7e000 rwxp f64b5000 00:00 0 f7f1f000-f7f21000 rwxp f7f1f000 00:00 0 f7f21000-f7f48000 r-xp 00000000 fd:00 60784705 /lib/libm-2.5.so f7f48000-f7f49000 r-xp 00026000 fd:00 60784705 /lib/libm-2.5.so f7f49000-f7f4a000 rwxp 00027000 fd:00 60784705 /lib/libm-2.5.so f7f4a000-f7f5f000 r-xp 00000000 fd:00 60784716 /lib/libpthread-2.5.so f7f5f000-f7f60000 ---p 00015000 fd:00 60784716 /lib/libpthread-2.5.so f7f60000-f7f61000 r-xp 00015000 fd:00 60784716 /lib/libpthread-2.5.so f7f61000-f7f62000 rwxp 00016000 fd:00 60784716 /lib/libpthread-2.5.so f7f62000-f7f64000 rwxp f7f62000 00:00 0 f7f64000-f7f67000 r-xp 00000000 fd:00 60784670 /lib/libdl-2.5.so f7f67000-f7f68000 r-xp 00002000 fd:00 60784670 /lib/libdl-2.5.so f7f68000-f7f69000 rwxp 00003000 fd:00 60784670 /lib/libdl-2.5.so f7f69000-f7f6a000 rwxp f7f69000 00:00 0 f7f8c000-f7f96000 r-xp 00000000 fd:00 60784678 /lib/libnss_files-2.5.so f7f96000-f7f97000 r-xp 00009000 fd:00 60784678 /lib/libnss_files-2.5.so f7f97000-f7f98000 rwxp 0000a000 fd:00 60784678 /lib/libnss_files-2.5.so f7f98000-f7f99000 rwxp f7f98000 00:00 0 ff8b9000-ff8ce000 rwxp 7ffffffe9000 00:00 0 [stack] ffffe000-fffff000 r-xp ffffe000 00:00 0 Writing to ./rh.38sb_score.dods.glmdir/38sb_score-dods/mc-z.neg.3.y.ocn.dat Abort