On Nov 22, 2017, at 1:33 AM, Hwee Ling Lee <hweeling.lee@gmail.com> wrote:

Dear Bruce,

Thanks for your reply.

I checked the folder and did not find the file that was requested.

What I have in the average folder that has 'RB*.gca' are 'RB_all_2016-05-10.vc700.gca' and 'RB_all_withskull_2016-05-10.vc700.gca'.

The other file in that folder is 'RB_all_2008-03-26.mni152.2mm.lta'.

Cheers,

Hweeling

On Nov 21, 2017 18:05, "Bruce Fischl" <fischl@nmr.mgh.harvard.edu> wrote:

Hi Hweeling

what is FREESURFER_HOME set to in the environment? Does that file exist? It is a standard part of our distribution

cheers
Bruce


 On Tue, 21 Nov 2017, Hwee Ling Lee wrote:

Dear all,

I have T1 images collected from the 7T MRI scanner.

I downloaded the most recent freesurfer software, and followed all
instructions to install the software before using it.

I would like to segment the T1 data using its high resolution image, and
also to segment the hippocampal subfields.

For command, I use this:

recon-all -all -s <subject name> -hires -i <subject dicom T1 image frame 1
location>

However, I get an error message:

cannot find $FREESURFER_HOME/average/RB_all_2008-03-26.gca

I'm not sure what I did wrong.

Also, how can I combine high resolution segmentation and hippocampal
subfields segmentation?

Could someone please help?

Thanks.

Best regards,
Hweeling

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