External Email - Use Caution
Hello FreeSurfer Developers,
I attempted to run recon-all in cerebellum hypo case, but it resulted in an error.
The message indicated “trgvtxno = -1 < 0.”
When I inspected the data in Freeview, I noticed that the left and right white matter and pial surfaces were intersecting near the corpus callosum.
Therefore, I mannually removed the white matter around the corpus callosum in wm.mgz and reran recon-all -autorecon2-wm -autorecon3 -subjid <subject>.
However, the same error continues to occur, and left and right surface isn't separated.
(https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TopologicalDefectV6.0)
I've searched the list and no similar errors have been reported.
Does anyone have any thoughts on how to trouble-shoot this one?
Also, Ive attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-macOS-darwin_x86_64-8.1.0-20250718-f30dfed
2) Platform: macOS Tahoe Version 26.1
3) uname -a: Darwin RELMPEDFAC27837 25.1.0 Darwin Kernel Version 25.1.0: Mon Oct 20 19:26:51 PDT 2025; root:xnu-12377.41.6~2/RELEASE_X86_64 x86_64
4) recon-all.log: see attached