On 29 March 2013 19:17, Douglas N Greve
<greve@nmr.mgh.harvard.edu> wrote:
Do you know if that version works outside of Virtualbox?
On 03/29/2013 03:13 PM, Tudor Popescu wrote:
I'm running freesurfer-Linux-centos4-stable-pub-v5.1.0, on Windows XP SP3, through Virtualbox 4.2.10. QDEC version is 1.4
THanks for your help
On 29 March 2013 17:33, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
If yyou just type mri_concat at the command line and nothting
happens, then something is definitely wrong. What system are you
running on?
On 03/28/2013 04:17 PM, Tudor Popescu wrote:
I tried running it by itself, to remind me of the syntax, so
that I can do a simple concatenation to see if it works. But
after typing mri_concat and hitting Enter, nothing happens,
I'm just returned to the command prompt.
The same happens if I type the following command, from the
folder containing the two input files
mri_concat -i C01.nii.gz -i C02.nii.gz -o test.nii.gz
Could this indicate something is wrong with the mri_concat
command itself?
On 28 March 2013 20:01, Douglas N Greve
<greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>> wrote:
Sorry, I've totally lost track of this thread. Are you
able to run
mri_concat outside of QDEC?
On 03/28/2013 03:51 PM, Tudor Popescu wrote:
> Still stuck with this error in my QDEC analysis attempt,
at my wit's
> end, could anyone help please? Thanks!
> Tudor
>
> On 26 March 2013 20:35, Tudor Popescu <tudor3@gmail.com
<mailto:tudor3@gmail.com>
<mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>>
> <mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>
<mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>>>> wrote:
>
> Just giving this thread a new bump, as /again /I am
receiving this
> error from mri_concat, upon pressing the Analyze
button in QDEC.
> Usual suspects are ruled out: $SUBJECTS_DIR is set
correctly
(and
> includes a copy of the fsaverage folder) and all files
included in
> the error are at the expected path. Screenshot attached.
>
>
> On 18 March 2013 11:20, Tudor Popescu
<tudor3@gmail.com <mailto:tudor3@gmail.com>
<mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>>
> <mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>
<mailto:tudor3@gmail.com <mailto:tudor3@gmail.com>>>> wrote:
>
> Hi Andreas
>
> I don't think it's about the OS (I'm on WInXP
SP3, 32 bit,
> hosting Linux using Vritualbox), but about the
environment
> variables, even though from what I could see, I
had them all
> correctly set. I gave up and am just running this
through FSL..
>
> Tudor
>
>
> On 18 March 2013 11:13, Andreas Berger
> <n0642496@students.meduniwien.ac.at
<mailto:n0642496@students.meduniwien.ac.at>
<mailto:n0642496@students.meduniwien.ac.at
<mailto:n0642496@students.meduniwien.ac.at>>
> <mailto:n0642496@students.meduniwien.ac.at
<mailto:n0642496@students.meduniwien.ac.at>
<mailto:n0642496@students.meduniwien.ac.at
<mailto:n0642496@students.meduniwien.ac.at>>>> wrote:
>
> On Friday, February 01, 2013 17:12:00 Tudor
Popescu
wrote:
> > Hi Doug
> >
> > Strangely, the basic mri_concat command now
worked, and
> so did the full
> > one. I think I initially had a "\" at the
end of my
> command, just after the
> > file name, which should not have been
there; although
> having tried again
> > with the backslash reinstated at the end,
the command
> still worked. Also,
> > the Analyze in the QDEC GUI now completes
without
error
> as well.
> >
> > It's quite frustrating that I still don't
know why it
> hasn't been working
> > all this time, especially since I didn't
really do
> anything different now
> > (that I was aware of!) and the files were
located
on the
> same partition
> > (Virtualbox's shared folder).
> >
> > Anyhow, thanks again for your kind help!
> >
> > Tudor
> >
> > On 31 January 2013 20:36, Douglas N Greve
> <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>> wrote:
> > > On 01/31/2013 12:30 PM, Tudor Popescu wrote:
> > >> Hi Doug,
> > >>
> > >> I'm not sure why that does not make sense,
shouldn't
> the input of
> > >> mri_concat be several
to-be-concatenated files
rather
> than a single
> > >> file?
> > >
> > > Sorry, I did not mean to imply that the
command line
> was wrong, rather
> > > that the behavior did not make sense --
it should
> print *something* to
> > > the terminal. It does make sense to have
multiple
> files, but it will
> > > also work with a single file. I just
suggested
this to
> make things
> > > simpler.
> > >
> > >> Anyway, after trying out the command
with only
one of
> the files from the
> > >> tutorial,
> > >>
> > >> /mri_concat --debug
> > >>
/media/Dell/_FS/buckner_data/**subjects/140/surf/lh.*
> > >> *thickness.fwhm10.fsaverage.mgh --o
> /media/Dell/_FS/buckner_data/**
> > >> subjects/qdec/y.mgh/
> > >>
> > >>
> > >> ..the same thing happens, namely it
returns to the
> command prompt, with
> > >> no message whatsoever.
> > >>
> > >> What could be wrong? As I mentioned,
all those MGH
> files are at the
> > >> expected path. Thanks again for your help!
> > >
> > > What happens if you type mri_concat with no
options at
> all?
> > >
> > >> Tudor
> > >>
> > >>
> > >> On 20 December 2012 05:24, Douglas Greve
> > >> <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>><mailto:
> > >>
> > >> greve@nmr.mgh.harvard.**edu
> <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>> wrote:
> > >> That does not make sense. Try using
only one
> input file. Also, put
> > >> --debug as the first option.
> > >> doug
> > >>
> > >> On 12/19/12 8:32 AM, Tudor Popescu
wrote:
> > >>> Hi Doug,
> > >>> So the full command is
> > >>>
> > >>> mri_concat
> > >>>
/media/Dell/_FS/buckner_data/**subjects/140/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/049/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/141/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/084/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/021/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/093/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/080/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/091/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/040/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/017/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/138/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/106/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/108/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/092/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/124/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/129/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/103/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/130/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/039/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/123/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/095/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/067/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/004/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/133/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/097/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/073/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/149/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/045/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/136/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/144/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/032/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/131/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/145/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/111/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/102/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/074/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/114/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/008/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/128/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/099/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>> --o
> > >>>
> /media/Dell/_FS/buckner_data/**subjects/qdec/lh-thickness-**
> > >>>
> > >>> age-fwhm10/y.mgh
> > >>>
> > >>> --debug
> > >>>
> > >>> ..however, as soon as I press
Enter, I'm just
> taken to the
> > >>> command prompt again, with no output
whatsoever!
> Am I calling
> > >>> mri_concat wrongly?!
> > >>>
> > >>> Tudor
> > >>>
> > >>> On 18 December 2012 17:15, Douglas
N Greve
> > >>> <greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
> > >>> <mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>
<mailto:greve@nmr.mgh.harvard <mailto:greve@nmr.mgh.harvard>>.
> <mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>
<mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>>.>**edu<greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>>>
> > >>>
> > >>> wrote:
> > >>> Hi Tudor,
> > >>> Can you run mri_concat from the
command line
> with the --debug
> > >>> option
> > >>> first. Send us the FULL
command line
and the
> full terminal
> > >>> output.
> > >>> doug
> > >>>
> > >>> On 12/18/2012 09:35 AM, Tudor
Popescu
wrote:
> > >>> > Hello everyone,
> > >>> >
> > >>> > I tried doing the QDEC group
analysis
> tutorial, however
> > >>>
> > >>> after doing
> > >>>
> > >>> > everything as instructed in the
tutorial,
> when pressing
> > >>>
> > >>> Analyze I get
> > >>>
> > >>> > the error message:
> > >>> >
> > >>> > /Error in Analyze: command
failed:
mri_concat
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/140/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>>
/media/Dell/_FS/buckner_data/**subjects/049/surf/lh.**
> > >>>
> > >>> thickness.fwhm10.fsaverage.mgh
> > >>>
> > >>> > (..)/
> > >>> >
> > >>> > ..even though those files
are all
> accessible there! I
> > >>>
> > >>> pasted that same
> > >>>
> > >>> > mri_concat manually into the
terminal,
> however no output is
> > >>>
> > >>> produced
> > >>>
> > >>> > at the command prompt, nor
any files are
> created.
> > >>> >
> > >>> > In previous attempts, I used
to also get
> this error
> > >>> >
> > >>> > /" .ERROR:
QdecProject::VerifySubjects:
> Couldn't find
> > >>>
> > >>> subject '032' in
> > >>>
> > >>> > SUBJECTS_DIR "/
> > >>> > /Syntax error: Bad fd number"/
> > >>> >
> > >>> > after following the sh/bash
workaround
> from this
> > >>>
> > >>>
> <https://mail.nmr.mgh.harvard.**edu/pipermail/freesurfer/2008-*
> > >>> *
> > >>>
> > >>>
> October/008618.html<https://mail.nmr.mgh.harvard.edu/pipermail/freesurf
> > >>> er/2008-October/008618.html>
> > >>>
> > >>> >previous
> > >>> >
> > >>> > thread, I no longer get that
error,
> however get stuck with
> > >>>
> > >>> the error
> > >>>
> > >>> > mentioned above.
> > >>> >
> > >>> > My SUBJECTS_DIR already
contains a
copy of
> the default
> > >>>
> > >>> subjects folder.
> > >>>
> > >>> > Debug info below. Any help
greatly
> appreciated!
> > >>> > Tudor
> > >>> >
> > >>> > --------
> freesurfer-Linux-centos4-**stable-pub-v5.1.0
> > >>> > -------- Setting up
environment for
> FreeSurfer/FS-FAST (and
> > >>> > FSL) FREESURFER_HOME
> /home/virtualuser/freesurfer
> > >>> > FSFAST_HOME
> /home/virtualuser/freesurfer/**fsfast
> > >>> > FSF_OUTPUT_FORMAT nii.gz
> > >>> > SUBJECTS_DIR
> /media/Dell/_FS/buckner_data/**subjects
> > >>> > MNI_DIR
/home/virtualuser/freesurfer/**mni
> > >>> >
> > >>> >
> > >>> >
> > >>> >
> ______________________________**_________________
> > >>> > Freesurfer mailing list
> > >>> >
Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > >>>
> > >>> <mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>
<mailto:Freesurfer@nmr.mgh <mailto:Freesurfer@nmr.mgh>>.
> <mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>
<mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>>.>**harvard.edu
<http://harvard.edu> <http://harvard.edu>
> <http://harvard.edu><Freesurfer@nmr.mgh.har
> > >>> vard.edu <http://vard.edu>
<http://vard.edu> <http://vard.edu>>
> > >>>
> > >>> >
> https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**
> > >>>
> > >>>
> freesurfer<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
> > >>> >
> > >>>
> > >>> --
> > >>> Douglas N. Greve, Ph.D.
> > >>> MGH-NMR Center
> > >>> greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
> > >>> <mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>
<mailto:greve@nmr.mgh.harvard <mailto:greve@nmr.mgh.harvard>>.
> <mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>
<mailto:greve@nmr.mgh.harvard
<mailto:greve@nmr.mgh.harvard>>.>**edu<greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>>
> > >>>
> > >>>
> > >>> Phone Number: 617-724-2358
> > >>> Fax: 617-726-7422
> > >>>
> > >>> Bugs:
> > >>>
surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting>
<http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting>
> <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting><http://surfer
> > >>> .nmr.mgh.harvard.edu/fswiki/BugReporting
<http://nmr.mgh.harvard.edu/fswiki/BugReporting>
<http://nmr.mgh.harvard.edu/fswiki/BugReporting>
> <http://nmr.mgh.harvard.edu/fswiki/BugReporting>>
> > >>>
> <http://surfer.nmr.mgh.**harvard.edu/fswiki/**BugReporting
<http://harvard.edu/fswiki/**BugReporting>
<http://harvard.edu/fswiki/**BugReporting>
> <http://harvard.edu/fswiki/**BugReporting><htt
> > >>>
> p://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
<http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
> <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>
> > >>>
> > >>> FileDrop:
> > >>>
> www.nmr.mgh.harvard.edu/**facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html>
<http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html>
> <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html><http://w
> > >>>
ww.nmr.mgh.harvard.edu/facility/filedrop/index.html
<http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html>
<http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> <http://ww.nmr.mgh.harvard.edu/facility/filedrop/index.html>>
> > >>>
> <http://www.nmr.mgh.harvard.**edu/facility/filedrop/index.**ht
> > >>>
> ml<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
> > >>>
> > >>>
> > >>> Outgoing:
> > >>>
> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**
> > >>>
> > >>> greve/
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
> > >>>
> > >>>
______________________________**_________________
> > >>> Freesurfer mailing list
> > >>> Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>
> <mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>
<mailto:Freesurfer@nmr.mgh.harvard.edu
<mailto:Freesurfer@nmr.mgh.harvard.edu>>>
> > >>> <mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>
<mailto:Freesurfer@nmr.mgh <mailto:Freesurfer@nmr.mgh>>.
> <mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>
<mailto:Freesurfer@nmr.mgh
<mailto:Freesurfer@nmr.mgh>>.>**harvard.edu
<http://harvard.edu> <http://harvard.edu>
> <http://harvard.edu><Freesurfer@nmr.mgh.har
> > >>> vard.edu <http://vard.edu>
<http://vard.edu> <http://vard.edu>>
> > >>>
> > >>>
> > >>>
>
https://mail.nmr.mgh.harvard.**edu/mailman/listinfo/**freesurfe
> > >>>
> r<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>
> > >>>
> > >>>
> > >>> The information in this e-mail
is intended
> only for the
> > >>> person to whom it is
> > >>> addressed. If you believe this e-mail was
> sent to you in
> > >>> error and the e-mail
> > >>> contains patient information,
please
contact
> the Partners
> > >>> Compliance HelpLine at
> > >>>
>
http://www.partners.org/**complianceline<http://www.partners.or
> > >>> g/complianceline>. If the e-mail was
sent to
you in
> error
> > >>> but does not contain patient
information,
> please contact the
> > >>> sender and properly
> > >>> dispose of the e-mail.
> > >
> > > --
> > > Douglas N. Greve, Ph.D.
> > > MGH-NMR Center
> > > greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>
> <mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>
<mailto:greve@nmr.mgh.harvard.edu
<mailto:greve@nmr.mgh.harvard.edu>>>
> > > Phone Number: 617-724-2358
> > > Fax: 617-726-7422
> > >
> > > Bugs:
> > >
surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting
<http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting>
<http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting>
> <http://surfer.nmr.mgh.harvard.edu/**fswiki/BugReporting><http://surfer.nmr.mgh.h
> > > arvard.edu/fswiki/BugReporting
<http://arvard.edu/fswiki/BugReporting>
<http://arvard.edu/fswiki/BugReporting>
> <http://arvard.edu/fswiki/BugReporting>>
FileDrop:
> > >
www.nmr.mgh.harvard.edu/**facility/filedrop/index.html
<http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html>
<http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html>
> <http://www.nmr.mgh.harvard.edu/**facility/filedrop/index.html><http://www.nmr.mg
> > >
h.harvard.edu/facility/filedrop/index.html
<http://h.harvard.edu/facility/filedrop/index.html>
<http://h.harvard.edu/facility/filedrop/index.html>
> <http://h.harvard.edu/facility/filedrop/index.html>>
Outgoing:
> > >
> ftp://surfer.nmr.mgh.harvard.**edu/transfer/outgoing/flat/**
> greve/
> > >
> <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>
>
> Hi surfers,
>
> sorry to bump this, but i seem to have the exact
same problem:
>
> - qdec informs me that mri_concat failed
> - mri_concat itself produces no output at all
> - also not with --debug or without any
arguments at all
> - however, mri_concat has a non-zero exit status
>
> btw, i also ran into the sh syntax error,
which i worked
> around by linking sh
> to bash. i assume this is not directly
related, but
maybe
> Tudor and i share
> the same platform, to which both problems
are related?
>
> i am using the 32bit centOS4 build on debian 7.
>
>
> greetings from Vienna