At 2024-11-12 23:49:48, "Douglas N. Greve" <dgreve@mgh.harvard.edu> wrote:

Can you take a look at your images and the aseg.presurf.mgz segmentation and the rh.orig.nofix? The program that is throwing an error is trying to determine where the non-cortical medial wall is based on the aseg and the orig.nofix. If one or both of those are bad, then it may fail.

On 11/11/2024 8:47 AM, ÍõÓÖ„Â wrote:

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Hello FreeSurfer Developers,

Thank you to the development team for integrating deep learning-based image processing pipelines! I encountered the following error while running the recon-all -all command in FreeSurfer 8.0.0-beta:
 
mri_label2label --label-cortex /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/surf/rh.orig.nofix /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/mri/aseg.presurf.mgz 0 /usr/local/freesurfer/8.0.0-beta/subjects/sub-JS_test/label/rh.nofix.cortex.label 
double free or corruption (out)
Abort (core dumped)
ERROR:
Command exited with non-zero status 1

This subject was successfully processed with FreeSurfer 7. I would like to know if this issue is related to insufficient memory or if it could be due to other reasons. Thank you again for your dedication and efforts.

(base) root@LXG:~# free
             total        used        free      shared  buff/cache   available
Mem:        32671564      688124    31172704        4728      810736    31547224
Swap:        8388608      118036     8270572

Best regards,
Youjie Wang

1) FreeSurfer version: freesurfer_ubuntu22-8.0.0-beta_amd64.deb
2) Platform: Windows WSL2
3) uname -a: Linux LXG 5.15.153.1-microsoft-standard-WSL2 #1 SMP Fri Mar 29 23:14:13 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached

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