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Hello FreeSurfer Developers,
I'm attempting to run longitudinal segmentation of hippocampal subfields by using the development version of FreeSurfer, but for some of my subjects I get the following error:
*******************
Global iteration 3
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***** Estimating subject-specific atlas *****
L-BFGS
Verbose: 0
MaximalDeformationStopCriterion: 1e-10
LineSearchMaximalDeformationIntervalStopCriterion: 1e-10
MaximumNumberOfIterations: 1000
BFGS-MaximumMemoryLength: 12
Subject atlas deformation, step 1 of 400
Did one deformation step of max. 0.38685 voxels in 7.733 seconds
minLogLikelihoodTimesPrior =
1.0297e+05
Subject atlas deformation, step 2 of 400
Error using kvlGEMSMatlab
/autofs/space/panamint_005/users/iglesias/software/freesurfer/GEMS2/kvlAtlasMeshDeformationOptimizer.cxx:327:
itk::ERROR: AtlasMeshDeformationLBFGSOptimizer(0x2b53b9427df0): search direction is not a descent direction!
Error in kvlStepOptimizer (line 11)
Error in SegmentSubfieldsT1Longitudinal (line 1169)
Does anyone have any thoughts on how to trouble-shoot this one? Also, I’ve attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-x86_64-unknown-linux-gnu-dev-20180426
2) Platform: CentOS Linux release 7.4.1708 (Core)
3) uname -a: Linux bcmhari-hpc12 3.10.0-327.el7.x86_64 #1 SMP Thu Nov 19 22:10:57 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
4) recon-all.log: see attached
Thanks,
Wayne