There is nothing interactive. You can use mri_fdr. It will compute the threshold, which you can then use in freeview. It will also do the thresholding for you.

On 2/22/2021 9:25 AM, Hannah Eichhorn wrote:

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Dear all,

I am using glmfit to analyse changes in cortical thickness, but I couldn't find a description on how to perform FDR correction with FreeSurfer.

Is there a way to perform FDR correction of the statistical maps in Freeview, analogous to how it is described for tksurfer in this tutorial: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Visualization?

Thank you very much for your help!

Best regards,

Hannah
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