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Oops, looks like the files didn't attach.  Here are links to the logs:

https://obd-public.s3.eu-west-2.amazonaws.com/recon-all-standard_out_log.log

https://obd-public.s3.eu-west-2.amazonaws.com/recon-all-status.log

https://obd-public.s3.eu-west-2.amazonaws.com/recon-all.log


Hi all.

I have a T1 scan which I run through recon-all with:

recon-all -all -parallel -subjid freesurfer

(after mksubjdirs etc)

On my office machine, recon-all completes successfully.

On a cloud machine (16GB of ram), it fails after about 4 hours.

I have attached the logs - the only immediate error I can see is "Cannot 
find rh.white.H".

Any advice would be much appreciated, thank you.

Ian
--

Ian Hardingham

Chief Technology Officer

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ian.hardingham@oxfordbraindiagnostics.com

+44 (0)7789 770555

Oxford Centre for Innovation | New Road | Oxford | OX1 1BY

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