Hi Francesco

look at mri_vol2vol -help and search for talairach. It has an explicit option for this (--tal). Or you can do it directly in tkregister2 if all you want to do is visualize the results of applying the transform (this is also in the mri_vol2vol help)

cheers
Bruce

On Tue, 1 Apr 2014, Francesco Baldacchini wrote:

Hi everybody,
I'm in the process of studying all the Recon-all steps to find the step that
is giving me problems in my study. Now I've just run the -talairach input
and I would like to see if the talairach.xfm came out correctly by applying
it to my ORIG.mgz, how can it do it? Which command do I have to use? I tried
MRI_XFORM_TO_HEADER but it didn't work. Thanks everybody in advance and
sorry if my question is too silly, but I'm a beginner. 

Francesco Baldacchini

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer


The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.