Uuummm could it be possible that you’re using the quantification script from a dev version that is more recent than the one you used to analyze the data? In that case, the script would expect v21 instead of v20, which would explain the problem.

Cheers,

Juan Eugenio Iglesias

Senior research fellow

CMIC (UCL), MGH (HMS) and CSAIL (MIT)

http://www.jeiglesias.com

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of "Deng, Yushan Wisteria" <YWDENG@mgh.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 10 January 2020 at 19:36
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command

Hi Eugenio,

Please see attached for the list of files. Thank you so much for your kind help!

Best,

Wisteria

Date: Wed, 8 Jan 2020 08:12:04 +0000
From: "Iglesias Gonzalez, Juan E." <JIGLESIASGONZALEZ@mgh.harvard.edu>
Subject: Re: [Freesurfer] Amygdala Segmentation T1.v20 Command
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Message-ID: <4B81084F-8361-40FA-851E-D30180DC8D23@mgh.harvard.edu>
Content-Type: text/plain; charset="utf-8"

Thanks, Wisteria. Can you please send us the list of files under the mri directory of any subject?
Cheers,
/Eugenio

Juan Eugenio Iglesias
Senior research fellow
CMIC (UCL), MGH (HMS) and CSAIL (MIT)
http://www.jeiglesias.com