On Tue, 2013-02-26 at 12:51 -0500, Daniel Cole wrote:
> I was holing out on an analysis before rebooting but that seemed to do
> the trick! Thanks all!
>
>
> Daniel
>
>
> On Mon, Feb 25, 2013 at 5:58 PM, Nick Schmansky
> <
nicks@nmr.mgh.harvard.edu> wrote:
> have you rebooted since installing XQuartz? i've found a
> reboot is
> necessary to get Terminal to open up again.
>
> N.
>
>
> On Mon, 2013-02-25 at 17:07 -0500, Daniel Cole wrote:
> > Hi Zeke,
> > Thank you for the advice. I have Mac OS X Version 10.7.5.
> > I checked to see if XQuartz is installed and it is. I
> reinstalled it
> > to be sure but I'm still running into the same problems. Do
> you (or
> > does anyone else) have other ideas about what could be
> causing this
> > issue?
> >
> > Thanks,
> > Daniel
> >
> >
> > On Thu, Feb 21, 2013 at 5:22 PM,
> <
zkaufman@nmr.mgh.harvard.edu> wrote:
> > Daniel,
> >
> > What operating system are you on? If your using
> MacOS, you
> > must have
> > XQuartz installed in order to use the the
> > Tkregister2/Tksurfer/Tkmedit
> > tools. Check the Application->Utilities folder to
> see if its
> > already
> > installed. If not, you can download it from here:
> >
> >
http://xquartz.macosforge.org/landing/
> >
> > If your are on Linux than I am sorry but someone
> else will
> > have to chime
> > in with a potential solution.
> >
> > -Zeke
> >
> >
> > > Hello freesurfers,
> > > I just ran registration of my functional images
> and am
> > trying to visualize
> > > the registration for assessment. However, when I
> use the
> > commands
> > > "tkregister-sess -s $SESSIONNAME -d
> $SESSIONDIRECTORY -fsd
> > bold -funcstem
> > > f"
> > > or
> > >
> > > "tkregister2 --targ T1.mgz --fstarg --s $SUBJECTID
> --surf
> > --mov
> > > $FUNCTIONAL_MRI --reg $REG_DAT --plane sag
> --movbright
> > $MYBRIGHTNESS"
> > >
> > > the command gets stuck on "Opening window
> SUBJECT01".
> > >
> > >
> > > I've also tried just opening tksurfer and tkmedit
> but the
> > terminal
> > > produces
> > > no output/windows opening and simply freezes.
> > >
> > > Any ideas to why this could be occurring? I've
> let it sit
> > at this stage
> > > for multiple hours without anything popping up and
> without
> > any errors.
> > >
> > >
> > > Thanks!
> > >
> > > Daniel
> > >
> > >
> > > --
> > > Daniel Cole
> > > University of Rochester
> > > Brain and Cognitive Sciences
> > >
dcole10@u.rochester.edu
> >
> > > _______________________________________________
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> > >
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> > >
>
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> >
> >
> >
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> >
> >
> >
> > --
> > Daniel Cole
> > University of Rochester
> > Brain and Cognitive Sciences
> >
dcole10@u.rochester.edu
> > _______________________________________________
> > Freesurfer mailing list
> >
Freesurfer@nmr.mgh.harvard.edu
> >
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>
>
>
>
>
>
>
> --
> Daniel Cole
> University of Rochester
> Brain and Cognitive Sciences
>
dcole10@u.rochester.edu